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Lag0008737 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008737
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:28994454..28994894
RNA-Seq ExpressionLag0008737
SyntenyLag0008737
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035918.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1845.33Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGK-STSPFQQPNETTSPDVMSVMMTNAGTSEERMAE
        MTS+G +SK  A S+  +   T SRS+ET+ +ED    D+A  + +++++  +  I I EN M+ + ++S      E   P++MSVM+TN  TSE RM E
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGK-STSPFQQPNETTSPDVMSVMMTNAGTSEERMAE

Query:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI
        + KK+NML+K+VE+++YEIASLK+ +ES DA ES HT T+K  DKGKT +
Subjt:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI

KAA0054002.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-1744.67Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQ-PNETTSPDVMSVMMTNAGTSEERMAE
        MTSE  +SK  A S+      TR+RS+ET+ +E+    ++A  + ++ ++  + EI I EN ++ K  S F+    E   P++  VM+T+  TSE+RM E
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQ-PNETTSPDVMSVMMTNAGTSEERMAE

Query:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI
        +EKKINML+K V+++NYEIASLK+ +ESRDA ES HT T K  DKGK  +
Subjt:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI

KAA0056609.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.3e-1844.22Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTL---DIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTS-PDVMSVMMTNAGTSEERM
        MTS+G +SK  A S+ Y  + TRSRS+ET+  ++  +   ++A     ++++  +  I   ENL++ +  S  +  +E  S P++MSVM+    TSE++M
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTL---DIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTS-PDVMSVMMTNAGTSEERM

Query:  AEVEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIKDKGK
        +E+EKKINML+K +E K+YEIASLK+ +ESRDATES HT T K+ GK
Subjt:  AEVEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIKDKGK

KAA0063235.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-1746.26Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPN-ETTSPDVMSVMMTNAGTSEERMAE
        MTS+  +SK  A S+      T SRS+ET+ ++D    ++AN +  + ++  +  I I ENL++ K  S F+  N ET  P++MSVM T+  TS +RM E
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPN-ETTSPDVMSVMMTNAGTSEERMAE

Query:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGK
        +EKKINML+K VE+++YEIA LK+ +ES DATES HT T    DKGK
Subjt:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGK

KAA0065983.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-1741.22Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTSPDVMSVMMTNAGTSEERMAEVE
        M S+ A+S+ + +S+ Y G ITR+RSK    E +Q  D+   +L+++ ES +  I I EN +   S S   +  +   PDVMSVMMT+  T+E  MAE+E
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTSPDVMSVMMTNAGTSEERMAEVE

Query:  KKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI
        +KIN L+K+VE++++EI +L+ QM++R+  ES  T  +K  DKGK  +
Subjt:  KKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI

TrEMBL top hitse value%identityAlignment
A0A5A7SZB7 Ty3-gypsy retrotransposon protein1.2e-1845.33Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGK-STSPFQQPNETTSPDVMSVMMTNAGTSEERMAE
        MTS+G +SK  A S+  +   T SRS+ET+ +ED    D+A  + +++++  +  I I EN M+ + ++S      E   P++MSVM+TN  TSE RM E
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGK-STSPFQQPNETTSPDVMSVMMTNAGTSEERMAE

Query:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI
        + KK+NML+K+VE+++YEIASLK+ +ES DA ES HT T+K  DKGKT +
Subjt:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI

A0A5A7VBF4 Ty3-gypsy retrotransposon protein1.8e-1746.26Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPN-ETTSPDVMSVMMTNAGTSEERMAE
        MTS+  +SK  A S+      T SRS+ET+ ++D    ++AN +  + ++  +  I I ENL++ K  S F+  N ET  P++MSVM T+  TS +RM E
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPN-ETTSPDVMSVMMTNAGTSEERMAE

Query:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGK
        +EKKINML+K VE+++YEIA LK+ +ES DATES HT T    DKGK
Subjt:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGK

A0A5A7VCU1 Ty3-gypsy retrotransposon protein3.0e-1741.22Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTSPDVMSVMMTNAGTSEERMAEVE
        M S+ A+S+ + +S+ Y G ITR+RSK    E +Q  D+   +L+++ ES +  I I EN +   S S   +  +   PDVMSVMMT+  T+E  MAE+E
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTSPDVMSVMMTNAGTSEERMAEVE

Query:  KKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI
        +KIN L+K+VE++++EI +L+ QM++R+  ES  T  +K  DKGK  +
Subjt:  KKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI

A0A5D3DAS0 Ty3-gypsy retrotransposon protein3.0e-1744.67Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQ-PNETTSPDVMSVMMTNAGTSEERMAE
        MTSE  +SK  A S+      TR+RS+ET+ +E+    ++A  + ++ ++  + EI I EN ++ K  S F+    E   P++  VM+T+  TSE+RM E
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQ-PNETTSPDVMSVMMTNAGTSEERMAE

Query:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI
        +EKKINML+K V+++NYEIASLK+ +ESRDA ES HT T K  DKGK  +
Subjt:  VEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIK--DKGKTTI

A0A5D3DLA7 Ty3-gypsy retrotransposon protein3.5e-1844.22Show/hide
Query:  MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTL---DIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTS-PDVMSVMMTNAGTSEERM
        MTS+G +SK  A S+ Y  + TRSRS+ET+  ++  +   ++A     ++++  +  I   ENL++ +  S  +  +E  S P++MSVM+    TSE++M
Subjt:  MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTL---DIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTS-PDVMSVMMTNAGTSEERM

Query:  AEVEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIKDKGK
        +E+EKKINML+K +E K+YEIASLK+ +ESRDATES HT T K+ GK
Subjt:  AEVEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIKDKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCGAAGGAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTACTATGTGGGGACAATTACGCGTAGTCGCTCCAAGGAAACCGAACACGAAGACAACCAAACTCT
TGACATCGCAAACAAGATGCTGAGACGCATGGCAGAATCTTCTCAACTTGAAATCGCCATTACAGAAAATCTGATGCTTGGCAAATCCACCTCTCCTTTTCAACAACCAA
ACGAAACAACAAGTCCTGATGTGATGTCTGTTATGATGACTAATGCAGGAACTAGTGAAGAACGTATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTT
GAAGATAAAAACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCACTGAATCAATTCACACCCTTACCATCAAAGACAAGGGAAAGACCACTATATA
A
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCGAAGGAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTACTATGTGGGGACAATTACGCGTAGTCGCTCCAAGGAAACCGAACACGAAGACAACCAAACTCT
TGACATCGCAAACAAGATGCTGAGACGCATGGCAGAATCTTCTCAACTTGAAATCGCCATTACAGAAAATCTGATGCTTGGCAAATCCACCTCTCCTTTTCAACAACCAA
ACGAAACAACAAGTCCTGATGTGATGTCTGTTATGATGACTAATGCAGGAACTAGTGAAGAACGTATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTT
GAAGATAAAAACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCACTGAATCAATTCACACCCTTACCATCAAAGACAAGGGAAAGACCACTATATA
A
Protein sequenceShow/hide protein sequence
MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTSPDVMSVMMTNAGTSEERMAEVEKKINMLLKMV
EDKNYEIASLKSQMESRDATESIHTLTIKDKGKTTI