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Lag0008744 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008744
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:29094946..29097969
RNA-Seq ExpressionLag0008744
SyntenyLag0008744
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]5.0e-0935.14Show/hide
Query:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVKVLNRELLD
        W PP    WK+N +AAW  D   GG+ WI+RD +G +I A  + I    +I  LE MA+ EGL+ I        +     + +ESD  + + +L+R+  D
Subjt:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVKVLNRELLD

Query:  LSEISIFIDEI
         +EI   ++EI
Subjt:  LSEISIFIDEI

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]1.4e-0834.17Show/hide
Query:  QTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEG-FLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLV
        + LP    WTPP +  WK+NVDA W D +  GG+ WI+RDSEG F++    K +S++L    LEA   IE                     +ESD  ++V
Subjt:  QTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEG-FLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLV

Query:  KVLNRELLDLSEISIFIDEI
         ++N+  + L+E+S+ +++I
Subjt:  KVLNRELLDLSEISIFIDEI

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.7e-0932.84Show/hide
Query:  QTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVK
        +TL +   W PP    W +N DA+W D    GG+ WIIR  +G ++ AG + +    ++ +LEA A++EGL+  L N  V   L      +E+D A++  
Subjt:  QTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVK

Query:  VLNRELLDLSEISIFIDEIRILERQDNVASFGSV
        +LNR+  DL++    ++EI  L     + +F  V
Subjt:  VLNRELLDLSEISIFIDEIRILERQDNVASFGSV

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.8e-0935.71Show/hide
Query:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQI-LINFKVYLELRSHEVVVESDEADLVKVLNRELL
        W PP    WK+N DAAW  D   GG+ WI+RD +G +I A  + I    +I  LE MA+ EGL+ I   + +   +     + +ESD  + + +L+R+  
Subjt:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQI-LINFKVYLELRSHEVVVESDEADLVKVLNRELL

Query:  DLSEISIFIDEI
        D +EI   ++EI
Subjt:  DLSEISIFIDEI

XP_023893303.1 uncharacterized protein LOC112005292 [Quercus suber]4.2e-0834.97Show/hide
Query:  LPPP----QTLPSV-GSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVV
        L PP    QT+P +   W PPK +  KIN D A F      G+  +IRDSEG ++G+  K+IS     + +EAMAV   +Q         L+L    V++
Subjt:  LPPP----QTLPSV-GSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVV

Query:  ESDEADLVKVLNRELLDLSEISIFIDEIRILERQDNVASFGSV
        E+D   LVK L+ +    S + + +DEIRI+    N   +  V
Subjt:  ESDEADLVKVLNRELLDLSEISIFIDEIRILERQDNVASFGSV

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.4e-0935.14Show/hide
Query:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVKVLNRELLD
        W PP    WK+N +AAW  D   GG+ WI+RD +G +I A  + I    +I  LE MA+ EGL+ I        +     + +ESD  + + +L+R+  D
Subjt:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVKVLNRELLD

Query:  LSEISIFIDEI
         +EI   ++EI
Subjt:  LSEISIFIDEI

A0A6J1CQG0 uncharacterized protein LOC1110132163.5e-0832.04Show/hide
Query:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHE-VVVESDEADLVKVLNRELL
        W+ P    WK+N DA+W ++  +GG+ WI+ D  G ++ AG  KI    +I  LE M +I GLQ        ++ ++S   + +ESD  ++++++ +E +
Subjt:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHE-VVVESDEADLVKVLNRELL

Query:  DLS
        DL+
Subjt:  DLS

A0A6J1D4B6 uncharacterized protein LOC1110171817.0e-0934.17Show/hide
Query:  QTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEG-FLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLV
        + LP    WTPP +  WK+NVDA W D +  GG+ WI+RDSEG F++    K +S++L    LEA   IE                     +ESD  ++V
Subjt:  QTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEG-FLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLV

Query:  KVLNRELLDLSEISIFIDEI
         ++N+  + L+E+S+ +++I
Subjt:  KVLNRELLDLSEISIFIDEI

A0A6J1DNV9 uncharacterized protein LOC1110224038.2e-1032.84Show/hide
Query:  QTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVK
        +TL +   W PP    W +N DA+W D    GG+ WIIR  +G ++ AG + +    ++ +LEA A++EGL+  L N  V   L      +E+D A++  
Subjt:  QTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVK

Query:  VLNRELLDLSEISIFIDEIRILERQDNVASFGSV
        +LNR+  DL++    ++EI  L     + +F  V
Subjt:  VLNRELLDLSEISIFIDEIRILERQDNVASFGSV

A0A6J1DSV1 uncharacterized protein LOC1110236081.8e-0935.71Show/hide
Query:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQI-LINFKVYLELRSHEVVVESDEADLVKVLNRELL
        W PP    WK+N DAAW  D   GG+ WI+RD +G +I A  + I    +I  LE MA+ EGL+ I   + +   +     + +ESD  + + +L+R+  
Subjt:  WTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAGGKKISRNLDIIMLEAMAVIEGLQQI-LINFKVYLELRSHEVVVESDEADLVKVLNRELL

Query:  DLSEISIFIDEI
        D +EI   ++EI
Subjt:  DLSEISIFIDEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTTCTGCTGCGTGGGGACTTTTATTCCCTTCAGTACTGATACCCCTCCCCTTTCTTCCCCCCAACATTTTCAGATTATGCAGTCGTCTCCCTTCGCCTCCGATCA
TCTCCCTCTTCCTCTGGTCGTCTCCCTCCGCGTCCAGCCGTCTCCTTCCGCCACCGACCGTCTCCCTCCGCCACAGACTCTTCCGAGTGTCGGGAGTTGGACCCCGCCGA
AGGAGAAGCAGTGGAAAATCAATGTTGATGCTGCTTGGTTCGACGACATTGGGATTGGAGGTGTGAGGTGGATTATCCGAGACTCCGAAGGTTTTCTGATCGGAGCTGGT
GGCAAGAAAATCTCAAGAAATTTAGACATAATCATGTTAGAAGCCATGGCGGTTATTGAAGGGCTTCAACAGATATTGATCAATTTCAAAGTTTACTTGGAGCTTCGCTC
GCATGAAGTTGTGGTCGAGTCGGATGAGGCGGATTTGGTGAAAGTCCTCAATCGCGAGTTGCTTGATTTGTCGGAGATCTCCATCTTCATCGATGAGATTCGAATCTTGG
AGAGGCAAGATAATGTGGCAAGCTTCGGGTCCGTTTGGAATACATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCTTCTGCTGCGTGGGGACTTTTATTCCCTTCAGTACTGATACCCCTCCCCTTTCTTCCCCCCAACATTTTCAGATTATGCAGTCGTCTCCCTTCGCCTCCGATCA
TCTCCCTCTTCCTCTGGTCGTCTCCCTCCGCGTCCAGCCGTCTCCTTCCGCCACCGACCGTCTCCCTCCGCCACAGACTCTTCCGAGTGTCGGGAGTTGGACCCCGCCGA
AGGAGAAGCAGTGGAAAATCAATGTTGATGCTGCTTGGTTCGACGACATTGGGATTGGAGGTGTGAGGTGGATTATCCGAGACTCCGAAGGTTTTCTGATCGGAGCTGGT
GGCAAGAAAATCTCAAGAAATTTAGACATAATCATGTTAGAAGCCATGGCGGTTATTGAAGGGCTTCAACAGATATTGATCAATTTCAAAGTTTACTTGGAGCTTCGCTC
GCATGAAGTTGTGGTCGAGTCGGATGAGGCGGATTTGGTGAAAGTCCTCAATCGCGAGTTGCTTGATTTGTCGGAGATCTCCATCTTCATCGATGAGATTCGAATCTTGG
AGAGGCAAGATAATGTGGCAAGCTTCGGGTCCGTTTGGAATACATTTTAA
Protein sequenceShow/hide protein sequence
MRFCCVGTFIPFSTDTPPLSSPQHFQIMQSSPFASDHLPLPLVVSLRVQPSPSATDRLPPPQTLPSVGSWTPPKEKQWKINVDAAWFDDIGIGGVRWIIRDSEGFLIGAG
GKKISRNLDIIMLEAMAVIEGLQQILINFKVYLELRSHEVVVESDEADLVKVLNRELLDLSEISIFIDEIRILERQDNVASFGSVWNTF