CuGenDBv2

Gene ID	Lag0008766
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:29537819..29538442
RNA-Seq Expression	Lag0008766
Synteny	Lag0008766
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]

3.9e-21

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Query:  HGLQKFIDPDYEVPPKFL----------PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLLELK-
        + L+ ++D + E P K++            SS      I N EY+ W RQD LI++W LGS+   I+ ++L C ++ ++W  L   +SS+++A+ ++ K 
Subjt:  HGLQKFIDPDYEVPPKFL----------PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLLELK-

Query:  --------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPSVNLT
                                   + +KPIS +DH+++IL GLG EY  M+SV++   + PS+Q V S+LLTQES ++    + + S+ SLP+VN+T
Subjt:  --------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPSVNLT

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.9e-26

34.48

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Query:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFL--PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL
        +WKFQ+   L  + L+ F++ + E P K+L    SS  ++    N  Y+ W RQD LI++W LGS+S  I+ ++L C ++ E+W  L   FSS+++A+ +
Subjt:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFL--PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL

Query:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS
        + K                            + +KP+S +DH+++IL GLG +Y  M+SV++   + PS+Q+V S+LLTQES  Q  S  +  S+ +LPS
Subjt:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS

Query:  VNL
        VN+
Subjt:  VNL

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

8.4e-24

32.51

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Query:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPP--SSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL
        +WKFQ+   L  + L+ F + + E P K+L    SS  ++ R  N EY+ W R + LI+ W LGS+S  I+ +++ C ++ E+W  L   FSS+++A+ +
Subjt:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPP--SSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL

Query:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS
        + K                            + +KP+S +DH+++IL GLG +Y  M+S+++   + PS+Q+V S+LLTQES  Q  S  +  S+ +LP 
Subjt:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS

Query:  VNL
        V +
Subjt:  VNL

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.9e-26

34.48

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Query:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFL--PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL
        +WKFQ+   L  + L+ F++ + E P K+L    SS  ++    N  Y+ W RQD LI++W LGS+S  I+ ++L C ++ E+W  L   FSS+++A+ +
Subjt:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFL--PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL

Query:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS
        + K                            + +KP+S +DH+++IL GLG +Y  M+SV++   + PS+Q+V S+LLTQES  Q  S  +  S+ +LPS
Subjt:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS

Query:  VNL
        VN+
Subjt:  VNL

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]

3.2e-31

37.75

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Query:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPPSSE--GTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL
        +WKFQ++  L+G+GL+ +ID + + P +F+  + +   +S+   N  Y  WI+QD LI+AW LGS++  I+ ++LDC ++ E+WT L   F+S+ +AR++
Subjt:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPPSSE--GTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL

Query:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS
        +LK                             A K +S  DH++HIL GLG E+D ++SV+T  +   +LQ+V S+LL QE    R+   ++NSDGSLPS
Subjt:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS

Query:  VNLT
        VNLT
Subjt:  VNLT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TUB3 Putative glutathione S-transferase isoform X1

1.9e-21

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Query:  HGLQKFIDPDYEVPPKFL----------PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLLELK-
        + L+ ++D + E P K++            SS      I N EY+ W RQD LI++W LGS+   I+ ++L C ++ ++W  L   +SS+++A+ ++ K 
Subjt:  HGLQKFIDPDYEVPPKFL----------PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLLELK-

Query:  --------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPSVNLT
                                   + +KPIS +DH+++IL GLG EY  M+SV++   + PS+Q V S+LLTQES ++    + + S+ SLP+VN+T
Subjt:  --------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPSVNLT

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.3e-26

34.48

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Query:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFL--PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL
        +WKFQ+   L  + L+ F++ + E P K+L    SS  ++    N  Y+ W RQD LI++W LGS+S  I+ ++L C ++ E+W  L   FSS+++A+ +
Subjt:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFL--PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL

Query:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS
        + K                            + +KP+S +DH+++IL GLG +Y  M+SV++   + PS+Q+V S+LLTQES  Q  S  +  S+ +LPS
Subjt:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS

Query:  VNL
        VN+
Subjt:  VNL

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

4.1e-24

32.51

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Query:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPP--SSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL
        +WKFQ+   L  + L+ F + + E P K+L    SS  ++ R  N EY+ W R + LI+ W LGS+S  I+ +++ C ++ E+W  L   FSS+++A+ +
Subjt:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPP--SSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL

Query:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS
        + K                            + +KP+S +DH+++IL GLG +Y  M+S+++   + PS+Q+V S+LLTQES  Q  S  +  S+ +LP 
Subjt:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS

Query:  VNL
        V +
Subjt:  VNL

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.3e-26

34.48

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Query:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFL--PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL
        +WKFQ+   L  + L+ F++ + E P K+L    SS  ++    N  Y+ W RQD LI++W LGS+S  I+ ++L C ++ E+W  L   FSS+++A+ +
Subjt:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFL--PPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL

Query:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS
        + K                            + +KP+S +DH+++IL GLG +Y  M+SV++   + PS+Q+V S+LLTQES  Q  S  +  S+ +LPS
Subjt:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS

Query:  VNL
        VN+
Subjt:  VNL

A0A6J1DLT9 uncharacterized protein LOC111021757

1.5e-31

37.75

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Query:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPPSSE--GTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL
        +WKFQ++  L+G+GL+ +ID + + P +F+  + +   +S+   N  Y  WI+QD LI+AW LGS++  I+ ++LDC ++ E+WT L   F+S+ +AR++
Subjt:  MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPPSSE--GTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLL

Query:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS
        +LK                             A K +S  DH++HIL GLG E+D ++SV+T  +   +LQ+V S+LL QE    R+   ++NSDGSLPS
Subjt:  ELK---------------------------TAADKPISHNDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPS

Query:  VNLT
        VNLT
Subjt:  VNLT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.1e-04

21.17

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Query:  WIRQDNLITAWFLGSISP-TIVVELLDCNTSTEVWTHLSTRFSSKHVARLL----ELKTA-----------------------ADKPISHNDHVVHILDG
        W ++D ++     G+++P       +  +TS ++W  +  +F +   AR L    EL+T                         D P++  + V+++L+G
Subjt:  WIRQDNLITAWFLGSISP-TIVVELLDCNTSTEVWTHLSTRFSSKHVARLL----ELKTA-----------------------ADKPISHNDHVVHILDG

Query:  LGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQR
        L  ++D +++V+      PS     +ML  +E  L+R
Subjt:  LGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQR

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.2e-07

26.25

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Query:  WIRQDNLITAWFLGSISPTIVVELLDCN-TSTEVWTHLSTRFSSKHVARLL---------------------------ELKTAADKPISHNDHVVHILDG
        W  +D L+  W  G+I+ +++  ++    T+ ++W  L   F     AR L                           +L T  D PIS    V+H+L+G
Subjt:  WIRQDNLITAWFLGSISPTIVVELLDCN-TSTEVWTHLSTRFSSKHVARLL---------------------------ELKTAADKPISHNDHVVHILDG

Query:  LGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPSVNLTQSMVP
        L  +YD +++V+      PS  +  SMLL +ES L   S + + S  + PS++     VP
Subjt:  LGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPSVNLTQSMVP

Sequences

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CDS sequence

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ATGTGGAAATTCCAAGTCCAGATTACACTTCGTGGCCATGGACTTCAAAAGTTTATTGATCCAGATTATGAAGTACCCCCAAAGTTTCTTCCACCTTCATCTGAAGGGAC
TAGTGCAAGAATATCCAATCTAGAGTACGAGTATTGGATTCGACAGGACAACCTCATCACCGCCTGGTTTCTTGGATCAATTTCACCGACGATTGTTGTGGAATTATTGG
ACTGTAATACTTCCACAGAGGTATGGACACATCTGTCTACTCGGTTTTCCTCCAAACATGTTGCTCGTCTTCTTGAATTAAAGACCGCTGCCGACAAACCTATATCCCAC
AATGATCATGTGGTCCACATCTTGGATGGCTTGGGTCTAGAGTATGACCCAATGGTCTCTGTCCTTACTGGTAATGACGAAATGCCCTCCTTACAAAAAGTCTACTCAAT
GCTCCTTACTCAAGAAAGTCATTTGCAAAGGCATTCCACCACAGTGGTCAATTCTGATGGTTCTTTACCTTCGGTCAATCTTACTCAGTCAATGGTCCCTTAA

mRNA sequence

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Protein sequence

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MWKFQVQITLRGHGLQKFIDPDYEVPPKFLPPSSEGTSARISNLEYEYWIRQDNLITAWFLGSISPTIVVELLDCNTSTEVWTHLSTRFSSKHVARLLELKTAADKPISH
NDHVVHILDGLGLEYDPMVSVLTGNDEMPSLQKVYSMLLTQESHLQRHSTTVVNSDGSLPSVNLTQSMVP

Lag0008766 (gene) of Sponge gourd (AG-4) v1 genome