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Lag0008780 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008780
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr9:29837790..29838095
RNA-Seq ExpressionLag0008780
SyntenyLag0008780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]4.3e-0938.2Show/hide
Query:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS
        S+ W+    G +LL KG+R    +G SI ++ D WL  P  FK+MSP     +  V +  TSS QWN+P L      ++VD I  +PL+
Subjt:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS

PKA49974.1 Putative ribonuclease H protein [Apostasia shenzhenica]5.6e-0939.33Show/hide
Query:  SSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFK-VMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLP
        SSY W+  + G DLL+ G+R    NG S+ +F DPWL +P+ F+ + SP  N  A  +VE +T    WN  K+   L   D  LI  +P
Subjt:  SSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFK-VMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLP

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]1.1e-0939.33Show/hide
Query:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS
        S+ W+    G +LL KG+R    NG SI ++ D WL  P  FK+MSP     + LV +  TSS QWN+P L      ++VD    +PL+
Subjt:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]3.2e-1238.2Show/hide
Query:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS
        SYFWKGF+ G DLL KG+R    NG +IN+F+DPW+ +P  F+ ++       + V + +  + QW++  +     +ED DLI ++P+S
Subjt:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.9e-1342.71Show/hide
Query:  SNFKSSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAI--LVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS
        +N KSSYFWKGF+ G DLL KG+R    NG +I  F+DPWL +P  FK +    N+ A+   V  F+T+   W++  +      ED DLI ++P+S
Subjt:  SNFKSSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAI--LVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS

TrEMBL top hitse value%identityAlignment
A0A5E4FZN9 PREDICTED: retrotransposon5.5e-1039.33Show/hide
Query:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS
        S+ W+    G +LL KG+R    NG SI ++ D WL  P  FK+MSP     + LV +  TSS QWN+P L      ++VD    +PL+
Subjt:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS

A0A6J1BRN0 uncharacterized protein LOC1110047871.5e-1238.2Show/hide
Query:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS
        SYFWKGF+ G DLL KG+R    NG +IN+F+DPW+ +P  F+ ++       + V + +  + QW++  +     +ED DLI ++P+S
Subjt:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-1342.71Show/hide
Query:  SNFKSSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAI--LVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS
        +N KSSYFWKGF+ G DLL KG+R    NG +I  F+DPWL +P  FK +    N+ A+   V  F+T+   W++  +      ED DLI ++P+S
Subjt:  SNFKSSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAI--LVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS

A0A803NXV2 Uncharacterized protein1.1e-1037.08Show/hide
Query:  SSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPL
        SS+ W   + GL LL  G+RK   +G+S++ F DPW+ +P+ F+ +SP    + ++V E + S   W++  L QY L  D+D+I  +PL
Subjt:  SSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPL

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)2.1e-0938.2Show/hide
Query:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS
        S+ W+    G +LL KG+R    +G SI ++ D WL  P  FK+MSP     +  V +  TSS QWN+P L      ++VD I  +PL+
Subjt:  SYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAATTTCAAATCTTCCTATTTTTGGAAGGGATTCGTATTGGGTTTAGATTTACTTAGAAAGGGTGTTAGGAAAAACCCTAGTAATGGCAAATCGATTAACTTGTT
CAATGATCCATGGTTGTCAAAACCAATGTTATTCAAAGTTATGTCTCCATGTCTTAATAGCAACGCTATTCTGGTTGTTGAGTTTGTTACCTCGTCTAGTCAGTGGAATA
TTCCAAAATTATGTCAATACTTGTTAAAGGAGGATGTGGACCTTATCAGAAATCTTCCACTTAGTGTTTCTACACCGGATAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCAATTTCAAATCTTCCTATTTTTGGAAGGGATTCGTATTGGGTTTAGATTTACTTAGAAAGGGTGTTAGGAAAAACCCTAGTAATGGCAAATCGATTAACTTGTT
CAATGATCCATGGTTGTCAAAACCAATGTTATTCAAAGTTATGTCTCCATGTCTTAATAGCAACGCTATTCTGGTTGTTGAGTTTGTTACCTCGTCTAGTCAGTGGAATA
TTCCAAAATTATGTCAATACTTGTTAAAGGAGGATGTGGACCTTATCAGAAATCTTCCACTTAGTGTTTCTACACCGGATAGATGA
Protein sequenceShow/hide protein sequence
MSNFKSSYFWKGFVLGLDLLRKGVRKNPSNGKSINLFNDPWLSKPMLFKVMSPCLNSNAILVVEFVTSSSQWNIPKLCQYLLKEDVDLIRNLPLSVSTPDR