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Lag0008781 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008781
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr9:29841069..29841735
RNA-Seq ExpressionLag0008781
SyntenyLag0008781
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]2.9e-1031.46Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRVS------------------------------KIDK-------------------NTSEEIKYQDQAVILLN
        ++E+EK +M ++ YS+++LYL+D VLR V                               K+D+                   N  E++  ++QAVILLN
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRVS------------------------------KIDK-------------------NTSEEIKYQDQAVILLN

Query:  SLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKEPIAFFIK-ENQKQHHRGRNPQKSQNSLSKEHGNQRK
        SLP++Y++VKAAIKY RD++T+  ++D+L+ R+LE+K E+K+      +  ++K+  +G    K ++S SK  G  RK
Subjt:  SLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKEPIAFFIK-ENQKQHHRGRNPQKSQNSLSKEHGNQRK

PON64464.1 hypothetical protein TorRG33x02_273130 [Trema orientale]8.4e-1031.79Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRV----------SKIDK-------------------------------------------NTSEEIKYQDQAV
        M  +EKEE+ + AYS +IL LADNVLR+V          SK+D                                            N  E+I  ++QA+
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRV----------SKIDK-------------------------------------------NTSEEIKYQDQAV

Query:  ILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKK---EPIAFFIKENQKQHHRGRNPQKSQN
        I+LNSLP+SYKD+K+ IKY R+++++D ++ +LR  DLE+K+EK+   E +    +  ++   +GR   +SQ+
Subjt:  ILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKK---EPIAFFIKENQKQHHRGRNPQKSQN

TXG73199.1 hypothetical protein EZV62_001778 [Acer yangbiense]8.4e-1037.14Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRVSK------------IDKNTSEEIKYQDQAVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELK
        +++  K +M ++A  ++IL L+DNVLR V++             +    E++  +++ +ILLNSLP S+KDVKAAIKY R ++++++ I +L+ ++LELK
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRVSK------------IDKNTSEEIKYQDQAVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELK

Query:  LEKKE
        +E+K+
Subjt:  LEKKE

TYK04234.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.9e-0932.17Show/hide
Query:  TEKEEMHDLAYSSVILYLADNVLRRVSK--------------------------------------------IDK---------NTSEEIKYQDQAVILL
        +EK +M ++AYS+++LYL+D VLR V +                                            +DK         N SEE+  ++Q VILL
Subjt:  TEKEEMHDLAYSSVILYLADNVLRRVSK--------------------------------------------IDK---------NTSEEIKYQDQAVILL

Query:  NSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKE
        NSLP++Y++VKA IKY +D++T+  ++D+L+ R+LE+K E+K+
Subjt:  NSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKE

XP_024931145.1 G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Ziziphus jujuba]1.7e-1041.9Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRVSKIDKNTSE-----------EIKYQDQ--AVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLEL
        ++E +K E+ ++A S++IL+L+DNVLR+   +D N               + + D+  AVILLNSLP++Y++VK AIKY RD+++++ ++ +LR RDLEL
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRVSKIDKNTSE-----------EIKYQDQ--AVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLEL

Query:  KLEKK
        K E K
Subjt:  KLEKK

TrEMBL top hitse value%identityAlignment
A0A2P5CTT8 Uncharacterized protein4.1e-1031.79Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRV----------SKIDK-------------------------------------------NTSEEIKYQDQAV
        M  +EKEE+ + AYS +IL LADNVLR+V          SK+D                                            N  E+I  ++QA+
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRV----------SKIDK-------------------------------------------NTSEEIKYQDQAV

Query:  ILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKK---EPIAFFIKENQKQHHRGRNPQKSQN
        I+LNSLP+SYKD+K+ IKY R+++++D ++ +LR  DLE+K+EK+   E +    +  ++   +GR   +SQ+
Subjt:  ILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKK---EPIAFFIKENQKQHHRGRNPQKSQN

A0A5A7U459 Putative polyprotein3.5e-0930.11Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRVS----------------------------------KIDK-------------------NTSEEIKYQDQAV
        ++E+EK +M ++ YS+++LYL+D VLR V                                   K+D+                   N  E++  ++QAV
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRVS----------------------------------KIDK-------------------NTSEEIKYQDQAV

Query:  ILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKE-PIAFFIKENQKQHHRGRNPQKSQNSLSKE
        ILLNSLP+ Y++VKAAIKY RD++ +  ++D+L+ R+LE+K E+K+  +    + ++K+  +G+  ++S  S SKE
Subjt:  ILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKE-PIAFFIKENQKQHHRGRNPQKSQNSLSKE

A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass1.4e-1031.46Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRVS------------------------------KIDK-------------------NTSEEIKYQDQAVILLN
        ++E+EK +M ++ YS+++LYL+D VLR V                               K+D+                   N  E++  ++QAVILLN
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRVS------------------------------KIDK-------------------NTSEEIKYQDQAVILLN

Query:  SLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKEPIAFFIK-ENQKQHHRGRNPQKSQNSLSKEHGNQRK
        SLP++Y++VKAAIKY RD++T+  ++D+L+ R+LE+K E+K+      +  ++K+  +G    K ++S SK  G  RK
Subjt:  SLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKEPIAFFIK-ENQKQHHRGRNPQKSQNSLSKEHGNQRK

A0A5C7IVV0 gag_pre-integrs domain-containing protein4.1e-1037.14Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRVSK------------IDKNTSEEIKYQDQAVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELK
        +++  K +M ++A  ++IL L+DNVLR V++             +    E++  +++ +ILLNSLP S+KDVKAAIKY R ++++++ I +L+ ++LELK
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRVSK------------IDKNTSEEIKYQDQAVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELK

Query:  LEKKE
        +E+K+
Subjt:  LEKKE

A0A6P6GBW8 G-type lectin S-receptor-like serine/threonine-protein kinase SD3-18.2e-1141.9Show/hide
Query:  MSETEKEEMHDLAYSSVILYLADNVLRRVSKIDKNTSE-----------EIKYQDQ--AVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLEL
        ++E +K E+ ++A S++IL+L+DNVLR+   +D N               + + D+  AVILLNSLP++Y++VK AIKY RD+++++ ++ +LR RDLEL
Subjt:  MSETEKEEMHDLAYSSVILYLADNVLRRVSKIDKNTSE-----------EIKYQDQ--AVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLEL

Query:  KLEKK
        K E K
Subjt:  KLEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAAACCGAAAAGGAAGAAATGCATGACTTGGCCTATAGCTCTGTGATACTTTATCTTGCCGATAATGTCCTTAGAAGAGTTAGTAAAATTGATAAGAATACTAG
TGAAGAAATTAAATATCAAGATCAAGCTGTGATCCTTTTGAACTCATTGCCAGACTCATATAAAGACGTGAAAGCTGCAATCAAATACAGAAGGGATGCCATGACTGTCG
ACAAAATCATTGATTCTTTGAGAATGAGGGACCTTGAGTTGAAATTAGAAAAGAAGGAACCAATAGCTTTCTTCATAAAAGAAAACCAGAAGCAACATCATCGAGGAAGA
AATCCTCAAAAGAGTCAGAATTCCTTGTCGAAAGAACATGGTAATCAGAGGAAAAATAAAAACAGTGGGAGAACTCAAGGGCAGTCCAAACAACAAGATTTGCAACATGG
AGTGCAATTACTGCGACAAAATAGGGCATTTGAAATGGAACTGCCATCAGCTGAAGAAGAAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAAACCGAAAAGGAAGAAATGCATGACTTGGCCTATAGCTCTGTGATACTTTATCTTGCCGATAATGTCCTTAGAAGAGTTAGTAAAATTGATAAGAATACTAG
TGAAGAAATTAAATATCAAGATCAAGCTGTGATCCTTTTGAACTCATTGCCAGACTCATATAAAGACGTGAAAGCTGCAATCAAATACAGAAGGGATGCCATGACTGTCG
ACAAAATCATTGATTCTTTGAGAATGAGGGACCTTGAGTTGAAATTAGAAAAGAAGGAACCAATAGCTTTCTTCATAAAAGAAAACCAGAAGCAACATCATCGAGGAAGA
AATCCTCAAAAGAGTCAGAATTCCTTGTCGAAAGAACATGGTAATCAGAGGAAAAATAAAAACAGTGGGAGAACTCAAGGGCAGTCCAAACAACAAGATTTGCAACATGG
AGTGCAATTACTGCGACAAAATAGGGCATTTGAAATGGAACTGCCATCAGCTGAAGAAGAAGGCTAA
Protein sequenceShow/hide protein sequence
MSETEKEEMHDLAYSSVILYLADNVLRRVSKIDKNTSEEIKYQDQAVILLNSLPDSYKDVKAAIKYRRDAMTVDKIIDSLRMRDLELKLEKKEPIAFFIKENQKQHHRGR
NPQKSQNSLSKEHGNQRKNKNSGRTQGQSKQQDLQHGVQLLRQNRAFEMELPSAEEEG