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Lag0008783 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008783
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:29918395..29919254
RNA-Seq ExpressionLag0008783
SyntenyLag0008783
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY69209.1 hypothetical protein CUMW_270170 [Citrus unshiu]3.0e-0736.89Show/hide
Query:  PADLLWWLLK-DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAINKMAHEVARSAL
        P D  W+ L  D  VD E   + +G+I+RN +GE M T       + DV++ EA  + EG+    D   S +LVE+DS  V  + R+ N MAH +A++A+
Subjt:  PADLLWWLLK-DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAINKMAHEVARSAL

Query:  RLR
         +R
Subjt:  RLR

XP_023876296.1 uncharacterized protein LOC111988743 [Quercus suber]6.0e-0831.51Show/hide
Query:  SPADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVS----------------
        +P D ++ L  D  + KELN S IGAI+RN +GE M  +      V D +  E +A R+ +   +DAGFS++++E D+A VM S                
Subjt:  SPADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVS----------------

Query:  -----------------SRAINKMAHEVARSALRLRMEGTWLEEVP
                          R  N +AH +AR A  +  +  WLEE P
Subjt:  -----------------SRAINKMAHEVARSALRLRMEGTWLEEVP

XP_030963515.1 uncharacterized protein LOC115984631 [Quercus lobata]7.1e-0928.93Show/hide
Query:  CSRCKRYEESTFHAIWECKGSRKYWSDS----------------------------PFFSWPGPMSGGSPADLLWWLLKDIVVDKELNLSSIGAIVRNER
        C  C +  E+  H +W C  ++  W+ S                              +SW G  +   P +  + L  D     E   S  GA++RNE+
Subjt:  CSRCKRYEESTFHAIWECKGSRKYWSDS----------------------------PFFSWPGPMSGGSPADLLWWLLKDIVVDKELNLSSIGAIVRNER

Query:  GEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAI--------NKMAHEVARSALRLRMEGTWLEE-VPLVVDGCY
        G+ M+ L      V D + +E MA R+ L   +DAGF+++++E D+A V   S  I        N +AH +AR A  L  E  WLEE  P  VD  Y
Subjt:  GEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAI--------NKMAHEVARSALRLRMEGTWLEE-VPLVVDGCY

XP_030963999.1 uncharacterized protein LOC115985177 [Quercus lobata]2.5e-0631.03Show/hide
Query:  PADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAI-------------
        P  L++ +  D+VV  E+N S IG +VRN+RGE M++L+     + D +  E +A ++ L  VVDA F+ +L+E D+  VM S  +I             
Subjt:  PADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAI-------------

Query:  --------------------NKMAHEVARSALRLRMEGTWLEEVP
                            N +AH +A+ A  +  E  WLEE P
Subjt:  --------------------NKMAHEVARSALRLRMEGTWLEEVP

XP_030969947.1 uncharacterized protein LOC115990240 [Quercus lobata]4.2e-0926.67Show/hide
Query:  CSRCKRYEESTFHAIWECKGSRKYWSDSPFFSWPG---------PMSGGSPADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDV
        C  CKR+ E+T HA+WEC  ++  W      +             +S   P  +++ L  D  V  + + S +G I+RN+RG+ M+ L      V +   
Subjt:  CSRCKRYEESTFHAIWECKGSRKYWSDSPFFSWPG---------PMSGGSPADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDV

Query:  LEAMAVREGLATVVDAGFSQVLVETDSARVMVS---------------------------------SRAINKMAHEVARSALRLRMEGTWLEEVP
         E +A R+ +  V+DAGFS +++E D + V+ S                                  R  N++AH +AR A  L  +  WLE+ P
Subjt:  LEAMAVREGLATVVDAGFSQVLVETDSARVMVS---------------------------------SRAINKMAHEVARSALRLRMEGTWLEEVP

TrEMBL top hitse value%identityAlignment
A0A120GUT1 Uncharacterized protein1.5e-0729.85Show/hide
Query:  CSRCKRYEESTFHAIWECKGSRKYWSDSPFFSWPGPMSG--GSPADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVR
        C  C+  ++S FH  ++C  ++++W +    + P P       P+   + +  D   D+E N  S G ++RNE G       R +E V D    EAMA R
Subjt:  CSRCKRYEESTFHAIWECKGSRKYWSDSPFFSWPGPMSG--GSPADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVR

Query:  EGLATVVDAGFSQVLVETDS---ARVMVSSRAIN
        EGL  VV+ G  +V++E D    +++++S  +I+
Subjt:  EGLATVVDAGFSQVLVETDS---ARVMVSSRAIN

A0A2H5QX83 RNase H domain-containing protein1.5e-0736.89Show/hide
Query:  PADLLWWLLK-DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAINKMAHEVARSAL
        P D  W+ L  D  VD E   + +G+I+RN +GE M T       + DV++ EA  + EG+    D   S +LVE+DS  V  + R+ N MAH +A++A+
Subjt:  PADLLWWLLK-DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAINKMAHEVARSAL

Query:  RLR
         +R
Subjt:  RLR

A0A2N9HY54 Reverse transcriptase1.1e-0726.06Show/hide
Query:  CSRCKRYEESTFHAIWECKGSRKYWSDSPFFSWPGPMSGGSPADLLWW------LLK---DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDV
        C  C  + E++FHA+W C  +++ WS  P F      +  S  DL WW      + K   D  +  +   + IG ++ N++G  + T+ R +     V+V
Subjt:  CSRCKRYEESTFHAIWECKGSRKYWSDSPFFSWPGPMSGGSPADLLWW------LLK---DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDV

Query:  LEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAINKMAHEVARSALRLRMEGTWLEEVPLVV
        +EA A  E +   +  G  +V+ E DS+ ++          H +      L   GT++E+  L V
Subjt:  LEAMAVREGLATVVDAGFSQVLVETDSARVMVSSRAINKMAHEVARSALRLRMEGTWLEEVPLVV

A0A7N2LRV2 RNase H domain-containing protein1.8e-0533.64Show/hide
Query:  DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVS-----SRAINKMAHEVARSALRLRMEG
        D  V  +L+   +G +VRN++GE M +L      V D +  EA+A R  +   V+ GF +V++E D+  VM S       + N +AH +A+ A  +  E 
Subjt:  DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVS-----SRAINKMAHEVARSALRLRMEG

Query:  TWLEEVP
         WLE+ P
Subjt:  TWLEEVP

A0A7N2RFA1 Uncharacterized protein4.0e-0531.11Show/hide
Query:  DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVS---------------------------
        D  +  +L  S IGAI+RNERGE M  +    + VLD    E +A R  L   +D GFS++++E DSA+V+ S                           
Subjt:  DIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATVVDAGFSQVLVETDSARVMVS---------------------------

Query:  ------SRAINKMAHEVARSALRLRMEGTWLEEVP
              SR  N   H +AR A  +  +  WLE+ P
Subjt:  ------SRAINKMAHEVARSALRLRMEGTWLEEVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTGCCGAGGGCGTGTTCTCGATGTAAGAGGTATGAGGAATCGACTTTCCATGCTATTTGGGAGTGTAAAGGTTCGAGGAAATATTGGAGTGACTCTCCTTTCTT
TTCTTGGCCTGGGCCCATGTCTGGTGGGAGTCCGGCAGATTTGCTATGGTGGTTGTTGAAAGATATAGTAGTGGATAAAGAGCTCAATCTCAGCAGTATTGGGGCAATTG
TTAGAAATGAGAGAGGGGAAGCGATGCTTACCTTGATGAGGCTGGTTGAGTTTGTGCTTGACGTGGATGTACTGGAGGCGATGGCGGTGCGCGAAGGGCTGGCTACAGTT
GTTGATGCTGGTTTCTCGCAGGTGTTGGTGGAAACGGATTCGGCGAGAGTGATGGTGTCGTCTCGGGCAATAAACAAGATGGCGCATGAAGTGGCAAGATCAGCGTTGAG
GCTGCGGATGGAAGGTACTTGGCTGGAGGAGGTGCCGCTGGTGGTCGATGGTTGCTACTCTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTGCCGAGGGCGTGTTCTCGATGTAAGAGGTATGAGGAATCGACTTTCCATGCTATTTGGGAGTGTAAAGGTTCGAGGAAATATTGGAGTGACTCTCCTTTCTT
TTCTTGGCCTGGGCCCATGTCTGGTGGGAGTCCGGCAGATTTGCTATGGTGGTTGTTGAAAGATATAGTAGTGGATAAAGAGCTCAATCTCAGCAGTATTGGGGCAATTG
TTAGAAATGAGAGAGGGGAAGCGATGCTTACCTTGATGAGGCTGGTTGAGTTTGTGCTTGACGTGGATGTACTGGAGGCGATGGCGGTGCGCGAAGGGCTGGCTACAGTT
GTTGATGCTGGTTTCTCGCAGGTGTTGGTGGAAACGGATTCGGCGAGAGTGATGGTGTCGTCTCGGGCAATAAACAAGATGGCGCATGAAGTGGCAAGATCAGCGTTGAG
GCTGCGGATGGAAGGTACTTGGCTGGAGGAGGTGCCGCTGGTGGTCGATGGTTGCTACTCTGCTTAG
Protein sequenceShow/hide protein sequence
MEVPRACSRCKRYEESTFHAIWECKGSRKYWSDSPFFSWPGPMSGGSPADLLWWLLKDIVVDKELNLSSIGAIVRNERGEAMLTLMRLVEFVLDVDVLEAMAVREGLATV
VDAGFSQVLVETDSARVMVSSRAINKMAHEVARSALRLRMEGTWLEEVPLVVDGCYSA