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Lag0008791 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008791
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr9:30200238..30203488
RNA-Seq ExpressionLag0008791
SyntenyLag0008791
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN83798.1 hypothetical protein VITISV_039072 [Vitis vinifera]2.4e-1846.67Show/hide
Query:  TPPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPP---------QENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDH
        T P PSL+  L+IKL ++N LL K+QLLN IIA  LE FID   + P         Q NP+F  W + N ++MSW+YSSL    +G+I+  S+A DIW  
Subjt:  TPPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPP---------QENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDH

Query:  LRTVYESASTARIMGIWSQL
        L   YES S A +M + SQL
Subjt:  LRTVYESASTARIMGIWSQL

GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]4.2e-2340.91Show/hide
Query:  TNQPRGPAAPTGFAYPPAPSPMLPFFRRIIRTLLFFLKSCNTPPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT---------PAPPQEN
        T+    P AP      P PS  +P     I      L +   P  PS+  PL +KL D NY++WK QLLN +IA  LE F+DG+         P   Q N
Subjt:  TNQPRGPAAPTGFAYPPAPSPMLPFFRRIIRTLLFFLKSCNTPPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT---------PAPPQEN

Query:  PQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARI
        P+F  WQ+YNR++MSW+Y+S+NE  LG+I+G +SA  IW+ L  +Y +AS A +
Subjt:  PQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARI

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]1.2e-2239.13Show/hide
Query:  TNQPRGPAAPTGFAYP----PAPSPMLPFFRRIIRTLLFFLKSCNTPP---FPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT---------
        ++ P  P  PT    P    P P+P +                 NT P    PS+  PL +KL D NY++WK QLLN +IA  LE F+DG+         
Subjt:  TNQPRGPAAPTGFAYP----PAPSPMLPFFRRIIRTLLFFLKSCNTPP---FPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT---------

Query:  PAPPQENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARI
        P   Q NP+F  WQ+YNR++MSW+Y+S+NE  LG+I+G +SA  IW+ L  +Y +AS A +
Subjt:  PAPPQENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARI

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]2.7e-2246.22Show/hide
Query:  PPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT-PAPPQ--------ENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHL
        P  PS+  P  IKL   NYL+WKNQLLN IIA  LE FIDG+ P PP+         N ++  WQ++NR++MSW+Y+SL +  +G+I+G +SAF+IW+ L
Subjt:  PPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT-PAPPQ--------ENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHL

Query:  RTVYESASTARIMGIWSQL
          +Y S+S A+I  + ++L
Subjt:  RTVYESASTARIMGIWSQL

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]5.6e-2850.85Show/hide
Query:  PFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPP---------QENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLR
        PFP+L  PLN+KL+D+N+LLWKNQLLN +IA  L  ++DGT  PP         Q NP +  W++YNR+LM W+YSSL+E+K+GE++   +  DIW  L 
Subjt:  PFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPP---------QENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLR

Query:  TVYESASTARIMGIWSQL
         VY+S +TARIMG+ ++L
Subjt:  TVYESASTARIMGIWSQL

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein1.3e-2246.22Show/hide
Query:  PPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT-PAPPQ--------ENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHL
        P  PS+  P  IKL   NYL+WKNQLLN IIA  LE FIDG+ P PP+         N ++  WQ++NR++MSW+Y+SL +  +G+I+G +SAF+IW+ L
Subjt:  PPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT-PAPPQ--------ENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHL

Query:  RTVYESASTARIMGIWSQL
          +Y S+S A+I  + ++L
Subjt:  RTVYESASTARIMGIWSQL

A0A6J1DQX7 uncharacterized protein LOC1110223152.7e-2850.85Show/hide
Query:  PFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPP---------QENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLR
        PFP+L  PLN+KL+D+N+LLWKNQLLN +IA  L  ++DGT  PP         Q NP +  W++YNR+LM W+YSSL+E+K+GE++   +  DIW  L 
Subjt:  PFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPP---------QENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLR

Query:  TVYESASTARIMGIWSQL
         VY+S +TARIMG+ ++L
Subjt:  TVYESASTARIMGIWSQL

A0A7J0EGI5 Uncharacterized protein2.0e-2340.91Show/hide
Query:  TNQPRGPAAPTGFAYPPAPSPMLPFFRRIIRTLLFFLKSCNTPPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT---------PAPPQEN
        T+    P AP      P PS  +P     I      L +   P  PS+  PL +KL D NY++WK QLLN +IA  LE F+DG+         P   Q N
Subjt:  TNQPRGPAAPTGFAYPPAPSPMLPFFRRIIRTLLFFLKSCNTPPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT---------PAPPQEN

Query:  PQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARI
        P+F  WQ+YNR++MSW+Y+S+NE  LG+I+G +SA  IW+ L  +Y +AS A +
Subjt:  PQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARI

A0A7J0GPN0 UBX domain-containing protein5.9e-2339.13Show/hide
Query:  TNQPRGPAAPTGFAYP----PAPSPMLPFFRRIIRTLLFFLKSCNTPP---FPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT---------
        ++ P  P  PT    P    P P+P +                 NT P    PS+  PL +KL D NY++WK QLLN +IA  LE F+DG+         
Subjt:  TNQPRGPAAPTGFAYP----PAPSPMLPFFRRIIRTLLFFLKSCNTPP---FPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGT---------

Query:  PAPPQENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARI
        P   Q NP+F  WQ+YNR++MSW+Y+S+NE  LG+I+G +SA  IW+ L  +Y +AS A +
Subjt:  PAPPQENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARI

A5C0U6 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-1846.67Show/hide
Query:  TPPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPP---------QENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDH
        T P PSL+  L+IKL ++N LL K+QLLN IIA  LE FID   + P         Q NP+F  W + N ++MSW+YSSL    +G+I+  S+A DIW  
Subjt:  TPPFPSLTPPLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPP---------QENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDH

Query:  LRTVYESASTARIMGIWSQL
        L   YES S A +M + SQL
Subjt:  LRTVYESASTARIMGIWSQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)8.1e-0929.13Show/hide
Query:  PLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPPQENPQFTLWQKYNRILMSWMYSSLNEDKL-GEIIGCSSAFDIWDHLRTVYESASTARIMGIW
        P+ + + +SNY  W+   L H ++FD+   IDGT  P   N     WQK + I+   +Y +L   +  G  +  S++ DIW  ++  + +   AR + + 
Subjt:  PLNIKLSDSNYLLWKNQLLNHIIAFDLESFIDGTPAPPQENPQFTLWQKYNRILMSWMYSSLNEDKL-GEIIGCSSAFDIWDHLRTVYESASTARIMGIW

Query:  SQL
        S+L
Subjt:  SQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCTGAAGTCTGCAAGTTGAAGTTGGTCGCGAAGAGGAAGAAAACTGAGAAGATCTTGTTGAATCACACCGTGGTTGACGGGGAAAATCACGTCGTGGCTTTGAA
TCATATTTGGAACGAAGGGGATTTCCCCTTCGTTTCAGACCGGAATCGAAGGGGAAACGGTGGCCACGACGTTTTAGATCTGGTCGATGACGATTCACGATTCAGTGAAT
TCGTGAAGTTCGTGCATTCGTCTTGTGGTCGGCGATTCACGATTTGGCGATTCGACGACAAAGCCACAATGGAGTTCGTGCGTTCGTGGCCTCGTGTCCAGATTCGACGG
CGAGTTCGTGAGTTGGTAACGGTTCGGCGCTTTAGATCTGTGTGCGTGCTCACTGTTCATCAGGTTGAGCAATTATTCTTATTATTCCTCTCTGAAATTCTTGACATTTT
ATGTTTTCTTCCTCATCCCAACATTACAAATCAACCCCGTGGTCCTGCTGCTCCTACAGGATTCGCTTACCCTCCAGCTCCCTCGCCTATGTTACCATTTTTCCGGCGTA
TAATTCGAACCCTCCTATTTTTCCTCAAATCCTGTAACACCCCTCCCTTTCCATCTCTGACCCCTCCCCTCAACATTAAGCTCTCTGATTCGAACTACTTACTGTGGAAG
AATCAACTGCTAAATCACATTATAGCCTTTGATTTGGAATCGTTCATTGATGGCACACCTGCTCCACCGCAAGAAAATCCCCAATTTACTCTTTGGCAAAAATATAATAG
AATTCTTATGAGTTGGATGTACTCTTCCTTGAATGAGGACAAACTCGGTGAAATTATTGGGTGTTCTTCTGCTTTCGATATTTGGGATCATCTCCGTACTGTCTATGAAT
CAGCTTCCACCGCAAGAATTATGGGTATTTGGTCTCAACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCTGAAGTCTGCAAGTTGAAGTTGGTCGCGAAGAGGAAGAAAACTGAGAAGATCTTGTTGAATCACACCGTGGTTGACGGGGAAAATCACGTCGTGGCTTTGAA
TCATATTTGGAACGAAGGGGATTTCCCCTTCGTTTCAGACCGGAATCGAAGGGGAAACGGTGGCCACGACGTTTTAGATCTGGTCGATGACGATTCACGATTCAGTGAAT
TCGTGAAGTTCGTGCATTCGTCTTGTGGTCGGCGATTCACGATTTGGCGATTCGACGACAAAGCCACAATGGAGTTCGTGCGTTCGTGGCCTCGTGTCCAGATTCGACGG
CGAGTTCGTGAGTTGGTAACGGTTCGGCGCTTTAGATCTGTGTGCGTGCTCACTGTTCATCAGGTTGAGCAATTATTCTTATTATTCCTCTCTGAAATTCTTGACATTTT
ATGTTTTCTTCCTCATCCCAACATTACAAATCAACCCCGTGGTCCTGCTGCTCCTACAGGATTCGCTTACCCTCCAGCTCCCTCGCCTATGTTACCATTTTTCCGGCGTA
TAATTCGAACCCTCCTATTTTTCCTCAAATCCTGTAACACCCCTCCCTTTCCATCTCTGACCCCTCCCCTCAACATTAAGCTCTCTGATTCGAACTACTTACTGTGGAAG
AATCAACTGCTAAATCACATTATAGCCTTTGATTTGGAATCGTTCATTGATGGCACACCTGCTCCACCGCAAGAAAATCCCCAATTTACTCTTTGGCAAAAATATAATAG
AATTCTTATGAGTTGGATGTACTCTTCCTTGAATGAGGACAAACTCGGTGAAATTATTGGGTGTTCTTCTGCTTTCGATATTTGGGATCATCTCCGTACTGTCTATGAAT
CAGCTTCCACCGCAAGAATTATGGGTATTTGGTCTCAACTTTAG
Protein sequenceShow/hide protein sequence
MQAEVCKLKLVAKRKKTEKILLNHTVVDGENHVVALNHIWNEGDFPFVSDRNRRGNGGHDVLDLVDDDSRFSEFVKFVHSSCGRRFTIWRFDDKATMEFVRSWPRVQIRR
RVRELVTVRRFRSVCVLTVHQVEQLFLLFLSEILDILCFLPHPNITNQPRGPAAPTGFAYPPAPSPMLPFFRRIIRTLLFFLKSCNTPPFPSLTPPLNIKLSDSNYLLWK
NQLLNHIIAFDLESFIDGTPAPPQENPQFTLWQKYNRILMSWMYSSLNEDKLGEIIGCSSAFDIWDHLRTVYESASTARIMGIWSQL