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Lag0008821 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008821
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr9:30677045..30677353
RNA-Seq ExpressionLag0008821
SyntenyLag0008821
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023874626.1 uncharacterized protein LOC111987155 [Quercus suber]8.4e-2962.38Show/hide
Query:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF
        I LIPKVHSPQ++TEFRPISLCNV YK+ISK L N++K  L  +I  SQSAF+PGR ++ N ++ FE +H + QR KG +   A+KLDMSKAYDRVEWS+
Subjt:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF

Query:  L
        L
Subjt:  L

XP_023908235.1 uncharacterized protein LOC112019924 [Quercus suber]4.9e-2962.38Show/hide
Query:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF
        IVLIPKV +P+++++FRPISLCNV YK+ISK LVN++K  L  IISP+QSAF+PGR +  N +L +E +H +  R KG KG+ ALKLD+SKAYDRVEW F
Subjt:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF

Query:  L
        L
Subjt:  L

XP_030923826.1 uncharacterized protein LOC115950728 [Quercus lobata]3.8e-2962.38Show/hide
Query:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF
        IVLIPK+ SP++++++RPISLCNV YK+ISK L N++K  L +IISP+QSAFIPGR +  N ++ +EC+HA+  R KG KG  ALKLD+SKAYDRVEW+F
Subjt:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF

Query:  L
        L
Subjt:  L

XP_042939444.1 uncharacterized protein LOC122274474 [Carya illinoinensis]1.9e-2859.8Show/hide
Query:  MIVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS
        +I LIPK H+P  VT+FRPISLCNV YK+I+K L N++K  L  IISP+Q+AF+PGR +  N I+ FE +H ++ R KG +G+ ALKLDMSKAYDR+EW+
Subjt:  MIVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS

Query:  FL
        FL
Subjt:  FL

XP_042990668.1 uncharacterized protein LOC122317666 [Carya illinoinensis]4.9e-2960.78Show/hide
Query:  MIVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS
        +I LIPK H+P  VT+FRPISLCNV YK+I+K L N++K  L  IISP+Q+AF+PGR +  N I+ FE +H ++ R KGS+G+ ALKLDMSKAYDR+EW+
Subjt:  MIVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS

Query:  FL
        FL
Subjt:  FL

TrEMBL top hitse value%identityAlignment
A0A453SQJ0 Reverse transcriptase domain-containing protein6.9e-2959.41Show/hide
Query:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF
        IVLIPKV SP+ +T+FRPISLCNV Y++ISK L N++K  L  +ISP+QSAF+PGR + VN ++ +EC H ++++T GS G+ A+KLDM KAYD+VEW F
Subjt:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF

Query:  L
        L
Subjt:  L

A0A453SQJ4 Reverse transcriptase domain-containing protein6.9e-2959.41Show/hide
Query:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF
        IVLIPKV SP+ +T+FRPISLCNV Y++ISK L N++K  L  +ISP+QSAF+PGR + VN ++ +EC H ++++T GS G+ A+KLDM KAYD+VEW F
Subjt:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF

Query:  L
        L
Subjt:  L

A0A5B7AER2 Reverse transcriptase domain-containing protein1.8e-2965.35Show/hide
Query:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF
        IVLIPKV++P++++EFRPISLCNV YK+ISK L N++KS L  II  SQSAF+PGR + VN ++ FE IH L+ R KG  G  ALKLDMSKAYDRVEW F
Subjt:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF

Query:  L
        L
Subjt:  L

A0A5B7BN08 Reverse transcriptase domain-containing protein5.3e-2963.37Show/hide
Query:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF
        I LIPKV+SP++++EFRPISLCNV YK+ISK L N++K+ L  II+ SQSAF+PGR +  N ++ FE IH L+ + KG  G +ALKLDMSKAYDRVEWSF
Subjt:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF

Query:  L
        L
Subjt:  L

A0A7N2LIH6 Uncharacterized protein1.2e-2860.4Show/hide
Query:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF
        I LIPK  +PQ++TEFRPISLCNV YK+ISK L N++K  LH +I  +QSAF+PGR +  N I+ FE +H++ QR KG +G  A+KLDMSKAYDRVEW++
Subjt:  IVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSF

Query:  L
        L
Subjt:  L

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein2.7e-0631.37Show/hide
Query:  IVLIPKV-HSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS
        I+LIPK      +   FRPISL N++ K+++K L N+++  + ++I   Q  FIPG     N       I  +  R K  K    + +D  KA+D+++  
Subjt:  IVLIPKV-HSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS

Query:  FL
        F+
Subjt:  FL

P08548 LINE-1 reverse transcriptase homolog9.4e-0732.35Show/hide
Query:  IVLIPKV-HSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS
        I LIPK    P R   +RPISL N++ K+++K L N+++  + +II   Q  FIPG     N       I  + +    +K    L +D  KA+D ++  
Subjt:  IVLIPKV-HSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS

Query:  FL
        F+
Subjt:  FL

P11369 LINE-1 retrotransposable element ORF2 protein2.6e-0934.31Show/hide
Query:  IVLIPKVH-SPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS
        I LIPK    P ++  FRPISL N++ K+++K L N+++  +  II P Q  FIPG     N       IH + +     K    + LD  KA+D+++  
Subjt:  IVLIPKVH-SPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS

Query:  FL
        F+
Subjt:  FL

P14381 Transposon TX1 uncharacterized 149 kDa protein5.3e-1035.29Show/hide
Query:  MIVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS
        ++ L+PK    + +  +RP+SL + +YK+++K +  ++KS L  +I P QS  +PGR +  N  L  + +H  R RT  S  +  L LD  KA+DRV+  
Subjt:  MIVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWS

Query:  FL
        +L
Subjt:  FL

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases2.4e-1344.93Show/hide
Query:  LVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSFL
        +V ++K  +  +I P+Q++FIPGR    N +   E +H++R R KG KGW  LKLD+ KAYDR+ W +L
Subjt:  LVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTTCTTATTCCTAAAGTCCATTCTCCGCAACGGGTTACAGAGTTCCGACCAATTTCTTTGTGCAATGTCAACTATAAGCTTATTTCGAAAGGTCTTGTTAATCA
GATGAAGAGCTTTTTGCATCGAATTATATCCCCGAGTCAGAGTGCTTTCATTCCTGGAAGGTGTGTGGTTGTTAATGCGATTTTAGGCTTTGAATGTATTCATGCTCTTA
GGCAGCGGACTAAGGGCTCAAAGGGTTGGACTGCTCTTAAATTGGACATGTCCAAAGCTTATGACCGAGTTGAGTGGTCTTTTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGTTCTTATTCCTAAAGTCCATTCTCCGCAACGGGTTACAGAGTTCCGACCAATTTCTTTGTGCAATGTCAACTATAAGCTTATTTCGAAAGGTCTTGTTAATCA
GATGAAGAGCTTTTTGCATCGAATTATATCCCCGAGTCAGAGTGCTTTCATTCCTGGAAGGTGTGTGGTTGTTAATGCGATTTTAGGCTTTGAATGTATTCATGCTCTTA
GGCAGCGGACTAAGGGCTCAAAGGGTTGGACTGCTCTTAAATTGGACATGTCCAAAGCTTATGACCGAGTTGAGTGGTCTTTTCTCTAA
Protein sequenceShow/hide protein sequence
MIVLIPKVHSPQRVTEFRPISLCNVNYKLISKGLVNQMKSFLHRIISPSQSAFIPGRCVVVNAILGFECIHALRQRTKGSKGWTALKLDMSKAYDRVEWSFL