CuGenDBv2

Gene ID	Lag0008831
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr9:30836549..30837875
RNA-Seq Expression	Lag0008831
Synteny	Lag0008831
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]

2.0e-54

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K+  + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP + TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP+ +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

KAA8519786.1 hypothetical protein F0562_014124 [Nyssa sinensis]

4.0e-55

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K+  + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP++ TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP+ +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

KAA8521875.1 hypothetical protein F0562_012811 [Nyssa sinensis]

4.4e-54

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K+  + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP++ TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP  +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]

6.7e-55

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K+  + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP++ TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP+ +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

KAA8535282.1 hypothetical protein F0562_030285 [Nyssa sinensis]

1.1e-54

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K   + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP++ TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP+ +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

TrEMBL top hits

e value

%identity

Alignment

A0A5J4ZHB6 Uncharacterized protein

9.5e-55

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K+  + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP + TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP+ +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

A0A5J4ZPW7 Retrotran_gag_3 domain-containing protein

1.9e-55

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K+  + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP++ TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP+ +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

A0A5J4ZT09 Flavin-containing monooxygenase

2.1e-54

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K+  + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP++ TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP  +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

A0A5J5A1U7 Integrase catalytic domain-containing protein

3.3e-55

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K+  + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP++ TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP+ +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

A0A5J5B049 Retrotran_gag_3 domain-containing protein

5.6e-55

38.68

Show/hide

Query:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF
        +H     + +  W  LE+ FS+STR+NI+ LK+ L +ISK   ++ID+Y+ + K   + LA+VS++I+ ED++ Y +NGLP  YN FKTS+RT+S++++ 
Subjt:  NHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSF

Query:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL
        +E++ ++K EE T+E   K  ++       MA N         G+      GRG G G F N  GR    GR      G   L +    P    + S+  
Subjt:  DELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLES--QGRGGWRQQGTRGRGTGGGCFDNSRGR----GR------GGVTL-FLWAIPMVLVKVSSRL

Query:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI
         P + +I                   Q + P  +LTAM  SA+ NT    S       N W TD G   H+T +LANLN    Y GD+NIT+ NGQ+L I
Subjt:  LPSLDRI-------------------QARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSI

Query:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS
        SH G   +  +D TF L+N+L VP++ TNLLSVHQFC D++C FIFDS  F IQDK + Q+LF GP+ +GLYP+ T  ++
Subjt:  SHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVS

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

7.3e-20

25.81

Show/hide

Query:  VWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSFDELHILMKTEE
        +W+TL K +++ +  ++  L+T+L+  +K + +TID Y+       ++LA +   +D ++ +   +  LP  Y      +  +    +  E+H      E
Subjt:  VWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSFDELHILMKTEE

Query:  MTLEKQSK---VEDATTVSHLAMAVNLESQGRGGWRQQGTRGRGTGGGCFDNSRGRGRGGVTLF---------------LWAIPMVLVKVSSRLLPSLDR
          L  +SK   V  AT +   A AV+  +         G R         +N+    +   T F               +  +     K  S+L   L  
Subjt:  MTLEKQSK---VEDATTVSHLAMAVNLESQGRGGWRQQGTRGRGTGGGCFDNSRGRGRGGVTLF---------------LWAIPMVLVKVSSRLLPSLDR

Query:  IQARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSISHVGSGQLSLSDKTFNLSNLLRVPN
        + ++ PP+  T     A+           P  SN WL D G   H+T++  NL++   Y G +++ V +G ++ ISH GS  LS   +  NL N+L VPN
Subjt:  IQARHPPTKLTAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSISHVGSGQLSLSDKTFNLSNLLRVPN

Query:  ITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLY--PISTLPVSTAPVGLFAQVGAKVS
        I  NL+SV++ C  +     F   SF ++D  +G  L  G   + LY  PI+    S+ PV LFA   +K +
Subjt:  ITTNLLSVHQFCTDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLY--PISTLPVSTAPVGLFAQVGAKVS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.3e-11

22.78

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Query:  VWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSFDELHILMKTEE
        +W+TL K +++ +  ++    T+L+ I++                 ++LA +   +D ++ +   +  LP  Y      +  +    S  E+H  +   E
Subjt:  VWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRTRSQSLSFDELHILMKTEE

Query:  MTLEKQSKVE----DATTVSHLAMAVNLESQGRGGWRQQGTRGRGTGGGCFDNSRGRGRGGVTL-FLWAIPMVLVK-VSSRLLPSLDRIQARHPPTKLTA
          L   +  E     A  V+H     N     RG  R        +      +S  R        +L    +  V+  S++  P L + Q+     + T+
Subjt:  MTLEKQSKVE----DATTVSHLAMAVNLESQGRGGWRQQGTRGRGTGGGCFDNSRGRGRGGVTL-FLWAIPMVLVK-VSSRLLPSLDRIQARHPPTKLTA

Query:  MDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSISHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFC
                 N   +   P ++N WL D G   H+T++  NL+    Y G +++ + +G ++ I+H GS  L  S ++ +L+ +L VPNI  NL+SV++ C
Subjt:  MDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSISHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFC

Query:  TDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLY--PISTLPVSTAPVGLFAQVGAKVS
          +     F   SF ++D  +G  L  G   + LY  PI+    S+  V +FA   +K +
Subjt:  TDSNCLFIFDSFSFTIQDKTSGQILFHGPNINGLY--PISTLPVSTAPVGLFAQVGAKVS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGATGGTTCAATCAAAGCTCCTGAGGCAATCATTCAGACTGAAGGACAACCACTGTGCATCAATCCTGAGCATGAAGTCTGTATGGGATACCTTGGAGAAACACTT
CTCTTCCTCTACTCGAACCAATATCATAAGTCTGAAAACTGAACTACAAAGTATTTCGAAACAATCTGGAGAAACAATTGATGCCTATGTATGTCGTGGGAAGGAAATTG
TCAATAAATTGGCTGCGGTTTCTATTGTGATCGATGTTGAGGATTTGATAACCTACACGATCAATGGCTTGCCATCCACCTATAATATCTTCAAGACCTCACTGCGAACT
CGTTCTCAGAGCCTCTCGTTTGATGAACTACACATTCTCATGAAAACGGAGGAAATGACTCTTGAAAAACAATCCAAGGTTGAGGATGCTACTACTGTTTCGCATCTCGC
TATGGCAGTGAATCTTGAATCTCAAGGCCGTGGGGGATGGCGTCAGCAAGGAACTCGTGGTAGAGGCACTGGTGGTGGCTGTTTTGACAATAGTCGAGGACGCGGTCGAG
GAGGGGTAACTCTTTTTCTTTGGGCAATACCAATGGTTCTGGTCAAGGTCAGTTCTCGTCTTCTTCCTTCTCTGGACAGAATTCAAGCAAGACATCCTCCAACGAAACTC
ACTGCTATGGATGCCTCTGCCAGCTCTAATACTAATGGTTTTACTTCTGGAACTTTGCCTCAGGACTCCAATGTTTGGCTGACTGATATAGGGTGCAATGCGCATTTGAC
CAATGAGTTAGCAAATCTGAATGTGTCTACTGCATACAACGGTGATGAGAACATTACAGTAGGTAACGGTCAGTCCCTTTCTATCTCCCATGTTGGTTCTGGACAACTTT
CCTTATCTGATAAAACCTTTAATCTTTCTAATCTCCTTCGTGTGCCCAACATTACTACCAATTTACTTTCTGTTCACCAATTTTGTACTGATAGCAACTGTCTTTTCATC
TTTGATTCTTTTTCCTTCACTATCCAAGACAAAACATCGGGCCAAATTCTGTTCCATGGACCCAACATTAATGGTTTGTATCCCATATCCACCTTACCTGTTTCAACAGC
ACCAGTAGGTCTCTTTGCTCAAGTTGGTGCCAAGGTCTCTTCTACTATATGA

mRNA sequence

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Protein sequence

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MLMVQSKLLRQSFRLKDNHCASILSMKSVWDTLEKHFSSSTRTNIISLKTELQSISKQSGETIDAYVCRGKEIVNKLAAVSIVIDVEDLITYTINGLPSTYNIFKTSLRT
RSQSLSFDELHILMKTEEMTLEKQSKVEDATTVSHLAMAVNLESQGRGGWRQQGTRGRGTGGGCFDNSRGRGRGGVTLFLWAIPMVLVKVSSRLLPSLDRIQARHPPTKL
TAMDASASSNTNGFTSGTLPQDSNVWLTDIGCNAHLTNELANLNVSTAYNGDENITVGNGQSLSISHVGSGQLSLSDKTFNLSNLLRVPNITTNLLSVHQFCTDSNCLFI
FDSFSFTIQDKTSGQILFHGPNINGLYPISTLPVSTAPVGLFAQVGAKVSSTI

Lag0008831 (gene) of Sponge gourd (AG-4) v1 genome