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Lag0008840 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008840
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionsplicing factor 3B subunit 2-like
Genome locationchr9:30926798..30929021
RNA-Seq ExpressionLag0008840
SyntenyLag0008840
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005684 - U2-type spliceosomal complex (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586162.1 Splicing factor 3B subunit 2, partial [Cucurbita argyrosperma subsp. sororia]3.2e-0789.19Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MT EV SQPNGV ANGGD DLNSNPKSGAAKKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

KAG6598947.1 Splicing factor 3B subunit 2, partial [Cucurbita argyrosperma subsp. sororia]2.2e-1678.38Show/hide
Query:  KPASPLALTTL-HRGPAGNSRVRGFFTDRFVRRLNPSMTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        KPA  LALT L  RGPAGNS VRG F DR VRR NP MT EV SQ NGVV+N GDLDLNSNPKSGAAKKSRESE
Subjt:  KPASPLALTTL-HRGPAGNSRVRGFFTDRFVRRLNPSMTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

KAG7020995.1 Splicing factor 3B subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-0891.89Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MT EV SQPNGVVANGGD DLNSNPKSGAAKKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

XP_022937998.1 splicing factor 3B subunit 2-like [Cucurbita moschata]4.9e-0891.89Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MT EV SQPNGVVANGGD DLNSNPKSGAAKKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

XP_023537139.1 splicing factor 3B subunit 2-like [Cucurbita pepo subsp. pepo]6.4e-0891.89Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MT EV SQPNGVVANGG+LDLNSNPKSGAAKKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

TrEMBL top hitse value%identityAlignment
A0A5A7U270 Splicing factor 3B subunit 24.2e-0589.19Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MTVEV SQPNGVV+N GDLDLNSNPKSGA KKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

A0A5D3C716 Splicing factor 3B subunit 2 isoform X24.2e-0589.19Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MTVEV SQPNGVV+N GDLDLNSNPKSGA KKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

A0A6J1D9P8 splicing factor 3B subunit 26.5e-0686.49Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MT EV +QPNGVV N GDLDLNSNPKSGAAKKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

A0A6J1FHL4 splicing factor 3B subunit 2-like2.4e-0891.89Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MT EV SQPNGVVANGGD DLNSNPKSGAAKKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

A0A6J1HNQ5 splicing factor 3B subunit 2-like7.7e-0786.49Show/hide
Query:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE
        MT EV SQPNGVV NGG LDLN NPKSGAAKKSRESE
Subjt:  MTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCAAACAAAGGGTCTCTTGAAGGGTTTGTTGTAAATGAAAGGATTTTGTCTCTGTTTATCTCTGGCATAGACGATGTGCACTGTTTTCAGGTTTCTTCTGAAAA
CCAGGTGATGGTTTCTGAAAACCAACTGCTGGTTTCTAGCTCTGCAACACAACACGCCCACATTTCTGAGATTTCTCTTCCACCACCGGCCTCATTCTCTCCCAATATAA
CTCCAAGATTTTCCCCCAATTTCCGCCGCTCGCTCCGTCTTGCCTCTCGTTTCTGCCCTCGCCGGAGCACCGACGGAAAACCCGCTTCCCCTCTTGCCCTTACTACCCTC
CACCGTGGCCCTGCCGGAAACAGTCGTGTGCGCGGGTTTTTTACTGATCGATTCGTGCGAAGGCTGAATCCGAGCATGACTGTGGAGGTGACTTCTCAACCGAATGGAGT
TGTCGCGAATGGTGGCGACTTGGACCTTAATTCTAACCCTAAATCTGGCGCCGCCAAGAAGTCGCGGGAAAGTGAAGGAGGCTACTGCTGGAGAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCAAACAAAGGGTCTCTTGAAGGGTTTGTTGTAAATGAAAGGATTTTGTCTCTGTTTATCTCTGGCATAGACGATGTGCACTGTTTTCAGGTTTCTTCTGAAAA
CCAGGTGATGGTTTCTGAAAACCAACTGCTGGTTTCTAGCTCTGCAACACAACACGCCCACATTTCTGAGATTTCTCTTCCACCACCGGCCTCATTCTCTCCCAATATAA
CTCCAAGATTTTCCCCCAATTTCCGCCGCTCGCTCCGTCTTGCCTCTCGTTTCTGCCCTCGCCGGAGCACCGACGGAAAACCCGCTTCCCCTCTTGCCCTTACTACCCTC
CACCGTGGCCCTGCCGGAAACAGTCGTGTGCGCGGGTTTTTTACTGATCGATTCGTGCGAAGGCTGAATCCGAGCATGACTGTGGAGGTGACTTCTCAACCGAATGGAGT
TGTCGCGAATGGTGGCGACTTGGACCTTAATTCTAACCCTAAATCTGGCGCCGCCAAGAAGTCGCGGGAAAGTGAAGGAGGCTACTGCTGGAGAGGATAG
Protein sequenceShow/hide protein sequence
MQANKGSLEGFVVNERILSLFISGIDDVHCFQVSSENQVMVSENQLLVSSSATQHAHISEISLPPPASFSPNITPRFSPNFRRSLRLASRFCPRRSTDGKPASPLALTTL
HRGPAGNSRVRGFFTDRFVRRLNPSMTVEVTSQPNGVVANGGDLDLNSNPKSGAAKKSRESEGGYCWRG