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Lag0008854 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008854
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr9:31038041..31039372
RNA-Seq ExpressionLag0008854
SyntenyLag0008854
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023878301.1 uncharacterized protein LOC111990748 [Quercus suber]5.8e-2644.12Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GDRNTK+FH +A+ R+++N I GI +  G W  +   +A++  SYF+N+  SS+P+   ++   + +  KVT +MN+ L++ F + E+  A+KQ+HP+KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPI
        PGPDG  A+F+QKYWS VGN   +  L++LNH  PI
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPI

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]4.4e-2643.26Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GD+NTK+FH +A+ RKRKN I G+ +   +W+ DR  + K F  YF+++  +S+P+   ++ AL  +  +VT +MN+QL   F   E+  A+ QM P+KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELLIV
        PGPDG PA F+QK+W  V    I  CL ILN R+    L+V
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELLIV

XP_024044510.1 uncharacterized protein LOC112100177 [Citrus clementina]4.0e-2737.44Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GDRNTK+FH +A+ R++KN I+GI++ +G+W  D   + + FG YF+N+  +S+P+   ++ AL+ V  KV+G+MN+QL + F + EI  A+ QM P+KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL---------IVSPPPLTTSSPPLK----IYAAATPTLVATL--------NSNHLAVAPTHI
        PG DG PA F+QK+WS V    +  CL ILN    + LL          VS P   T   P+     IY     T+   L        +SN  A  P  +
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL---------IVSPPPLTTSSPPLK----IYAAATPTLVATL--------NSNHLAVAPTHI

Query:  LVN
        + +
Subjt:  LVN

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]1.1e-2745.11Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GD+NTK+FH +A+ RKRKN++ GI+N  GIW+ +R ++ +   S+F  +  +S+P  + +   LQ +S KVT +MN QL K F   ++E A+  M P+KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHR
        PGPDG PA F+QK+W  V N  I  CL++LN +
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHR

XP_030487384.1 uncharacterized protein LOC115704310 [Cannabis sativa]1.7e-2541.73Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GDRNTK+FH +A+ R++KNEI+G+ +  GIW  D+  + K    Y++ +  SS  N  +    L  +  KVT  MN+ L+  F   E+ +A+K+M+P+KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL
        PG DG PALFYQK+WS +    I  CL++LN    ++ L
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL

TrEMBL top hitse value%identityAlignment
A0A2N9GM07 Reverse transcriptase domain-containing protein4.0e-2541.98Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GD+NT++FH +A+ R+++NEI+G+    G+W+T++  +  +   YF  M  +S P+   V   ++ +  KVT  MNDQL ++F   E+ +A++QMHP+KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILN
        PGPDG  A+F+QKYW+ VG    E  L +LN
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILN

A0A2N9GNK5 Reverse transcriptase domain-containing protein5.3e-2545.8Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GDRNTK+FH RAT R+R+N I  + +GDG W+    ++A     Y++ +  +S+P++  ++ A+ +V   VT +MN  L++ F   E+E AIKQM PSKA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILN
        PGPDG P +FYQKYW  VGN      L  LN
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILN

A0A803P3X4 Uncharacterized protein1.7e-2843.88Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GDRNTK+FH +A+ R++KNEI+G+ +  G+W  D+  + K    Y++ +  SS  N A+ +  L+ V  KVT  MND L+ +    ++ RA+K M+P+KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL
        PGPDG PALFYQK+WS +    I  CL++LNH   ++ L
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL

A0A803P9M1 Uncharacterized protein2.5e-2746.04Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GD NTK+F+++A+ R++KNEI+G+ +  GIW TD   + K    YF N+  +SN N   VD  L+ V  KVT  MN+ L+  F   E+  A+K M+P KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL
        PG DG PALFYQK+W  + N  +E CL ILNH   +  L
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL

A0A803PV25 Uncharacterized protein3.1e-2540.29Show/hide
Query:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA
        GDRNTK+FH +A+ R++KNEI+G+ +  G+W  D++ + +    Y+  +  SS+ N ++++  L  V  KV+  MN+ LL  F   E+ RA+K+M+P+KA
Subjt:  GDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKA

Query:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL
        PG DG PALFYQK+WS +    +   L++LN+   ++ L
Subjt:  PGPDGFPALFYQKYWSDVGNITIENCLDILNHRKPIELL

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein9.9e-0529.81Show/hide
Query:  RKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDR----SEIERAIKQMHPSKAPGPDGFPALF
        ++ KN+I  I N  G   TD  ++  +   Y+ ++  +   N   +D  L   +     ++N + ++S +R    SEI   I  +   K+PGPDGF A F
Subjt:  RKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDR----SEIERAIKQMHPSKAPGPDGFPALF

Query:  YQKY
        YQ+Y
Subjt:  YQKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATAGAAACACCAAGTGGTTCCATAAACGAGCAACTATGAGGAAAAGGAAAAATGAGATTCGTGGAATTGATAATGGTGATGGGATATGGATTACAGATCGAAT
TCAAATGGCAAAATCTTTTGGATCCTATTTTTCAAATATGGTTAAGTCTTCTAACCCCAACTCTGCTTTAGTTGATCATGCTCTACAGGATGTTAGTAAAAAGGTCACGG
GTCAGATGAATGACCAGCTACTAAAGTCTTTTGATAGGAGCGAGATTGAAAGGGCGATTAAACAAATGCATCCATCCAAGGCACCTGGCCCAGACGGTTTCCCAGCATTA
TTTTATCAGAAATATTGGTCTGATGTTGGGAATATCACTATTGAGAATTGCCTAGACATATTGAATCACAGGAAACCGATTGAGTTGCTCATTGTTTCGCCGCCACCGCT
CACCACATCGTCGCCGCCGTTGAAGATCTACGCCGCCGCCACTCCGACGCTTGTAGCCACCTTGAACTCGAACCATCTAGCAGTAGCTCCGACCCACATTCTAGTGAATT
TCCATGGAAGAAAAGGAAAAAAGAAAAGAAGAAAATCGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGATAGAAACACCAAGTGGTTCCATAAACGAGCAACTATGAGGAAAAGGAAAAATGAGATTCGTGGAATTGATAATGGTGATGGGATATGGATTACAGATCGAAT
TCAAATGGCAAAATCTTTTGGATCCTATTTTTCAAATATGGTTAAGTCTTCTAACCCCAACTCTGCTTTAGTTGATCATGCTCTACAGGATGTTAGTAAAAAGGTCACGG
GTCAGATGAATGACCAGCTACTAAAGTCTTTTGATAGGAGCGAGATTGAAAGGGCGATTAAACAAATGCATCCATCCAAGGCACCTGGCCCAGACGGTTTCCCAGCATTA
TTTTATCAGAAATATTGGTCTGATGTTGGGAATATCACTATTGAGAATTGCCTAGACATATTGAATCACAGGAAACCGATTGAGTTGCTCATTGTTTCGCCGCCACCGCT
CACCACATCGTCGCCGCCGTTGAAGATCTACGCCGCCGCCACTCCGACGCTTGTAGCCACCTTGAACTCGAACCATCTAGCAGTAGCTCCGACCCACATTCTAGTGAATT
TCCATGGAAGAAAAGGAAAAAAGAAAAGAAGAAAATCGTGGTGA
Protein sequenceShow/hide protein sequence
MGDRNTKWFHKRATMRKRKNEIRGIDNGDGIWITDRIQMAKSFGSYFSNMVKSSNPNSALVDHALQDVSKKVTGQMNDQLLKSFDRSEIERAIKQMHPSKAPGPDGFPAL
FYQKYWSDVGNITIENCLDILNHRKPIELLIVSPPPLTTSSPPLKIYAAATPTLVATLNSNHLAVAPTHILVNFHGRKGKKKRRKSW