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Lag0008877 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008877
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA ligase
Genome locationchr9:31569192..31569661
RNA-Seq ExpressionLag0008877
SyntenyLag0008877
Gene Ontology termsGO:0006266 - DNA ligation (biological process)
GO:0006273 - lagging strand elongation (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003910 - DNA ligase (ATP) activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570819.1 DNA ligase 1, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3265.44Show/hide
Query:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK+                       SSLALESTPP+ESQ G+STST DNHG P+L K E+AV+LGETKLRQD+GG  G K 
Subjt:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK
        G   NK CA+ VQERT KLKSSIPELKKKAKDFNSK
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK

KAG7010661.1 DNA ligase 1 [Cucurbita argyrosperma subsp. argyrosperma]2.4e-3164.71Show/hide
Query:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK+                       SSLALESTPP+ESQ G+STST DNHG P+  K E+AV+LGETKLRQD+GG  G K 
Subjt:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK
        G   NK CA+ VQERT KLKSSIPELKKKAKDFNSK
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK

XP_023512549.1 DNA ligase 1 [Cucurbita pepo subsp. pepo]2.2e-3266.18Show/hide
Query:  MSSRPSAFDALMSGAQAAAK---------------------RSLSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK                     +S SSLALESTPP+ESQ G+STST DNHG P+L K E+AV+LGETKLRQD+GG  G K 
Subjt:  MSSRPSAFDALMSGAQAAAK---------------------RSLSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK
        G   NK CA+ VQERT KLKSSIPELKKKAKDFNSK
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK

XP_038900958.1 DNA ligase 1 isoform X1 [Benincasa hispida]1.8e-3163.04Show/hide
Query:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK+                       SS+ALESTP +ESQ G+S +  DNHGG HL K EDA +LGETKLRQDNGG V  KN
Subjt:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM
        G   NK CA+ VQERT KLKSSIPELK+KAKDFNSKN+
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM

XP_038900960.1 DNA ligase 1 isoform X2 [Benincasa hispida]1.8e-3163.04Show/hide
Query:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK+                       SS+ALESTP +ESQ G+S +  DNHGG HL K EDA +LGETKLRQDNGG V  KN
Subjt:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM
        G   NK CA+ VQERT KLKSSIPELK+KAKDFNSKN+
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM

TrEMBL top hitse value%identityAlignment
A0A0A0KGJ2 DNA ligase1.8e-2963.77Show/hide
Query:  MSSRPSAFDALMSGAQAAAKR--------------SLSS-------LALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK+              SL S       LALESTPP+ESQ G+S S  D+HGG HL    D V+LGETKLRQDN GGVG K 
Subjt:  MSSRPSAFDALMSGAQAAAKR--------------SLSS-------LALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM
        G   NKTCA+ VQERT KLKSS  ELKKKAKDFNSKN+
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM

A0A5D3DKM3 DNA ligase3.2e-2962.32Show/hide
Query:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK+                       S LALESTPP+ESQ G+S    D+HGG HL    D V+LGETKL QDNGGGVG K 
Subjt:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM
        G   NKTCA+ VQERT KLKSSI ELKKKAKDFNSKN+
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM

A0A6J1CGY4 DNA ligase3.7e-3063.57Show/hide
Query:  MSSRPSAFDALMSGAQAAAKRS-----------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGT
        MSSRPSAFDALMSGA+AAAK+                         SS  LES  P+ESQ GN  S  DN GG HLG  E+AV+LGETKL QDNGG VGT
Subjt:  MSSRPSAFDALMSGAQAAAKRS-----------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGT

Query:  KNGVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM
        KNG A +KTCAT VQERT KLKSSIPELKKKAKDFNSKN+
Subjt:  KNGVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSKNM

A0A6J1FU87 DNA ligase1.2e-3164.71Show/hide
Query:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK+                       SSLALESTPP+ESQ G+STST DNHG P+  K E+AV+LGETKLRQD+GG  G K 
Subjt:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK
        G   NK CA+ VQERT KLKSSIPELKKKAKDFNSK
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK

A0A6J1JDM0 DNA ligase7.5e-3163.97Show/hide
Query:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN
        MSSRPSAFDALMSGA+AAAK+                       SSLAL+STPP+ESQ  +STST DNHG P+L K E+AV+LGETKLRQD+GG  G K 
Subjt:  MSSRPSAFDALMSGAQAAAKRS---------------------LSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKN

Query:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK
        G   NK CA+ VQERT KLKSSIPELKKKAKDFNSK
Subjt:  GVAMNKTCATDVQERTTKLKSSIPELKKKAKDFNSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTCGCCCTTCTGCTTTTGATGCTCTCATGTCCGGTGCGCAGGCCGCTGCCAAAAGAAGCTTATCTTCACTTGCTCTGGAGTCAACACCGCCTATTGAATCGCA
GGGCGGCAACTCGACCTCAACTTCGGACAATCATGGAGGTCCTCATCTGGGAAAGTTCGAGGACGCTGTAAATTTGGGAGAAACCAAGTTGCGTCAGGATAATGGTGGAG
GTGTTGGAACCAAAAATGGGGTGGCGATGAACAAGACGTGCGCGACTGATGTTCAAGAAAGAACTACGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAG
GATTTCAATTCGAAAAATATGCTGCAAGTTGGAAAAATGCTGCAAGGATTTCAATTCCAGAGCACACGAAGGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTCGCCCTTCTGCTTTTGATGCTCTCATGTCCGGTGCGCAGGCCGCTGCCAAAAGAAGCTTATCTTCACTTGCTCTGGAGTCAACACCGCCTATTGAATCGCA
GGGCGGCAACTCGACCTCAACTTCGGACAATCATGGAGGTCCTCATCTGGGAAAGTTCGAGGACGCTGTAAATTTGGGAGAAACCAAGTTGCGTCAGGATAATGGTGGAG
GTGTTGGAACCAAAAATGGGGTGGCGATGAACAAGACGTGCGCGACTGATGTTCAAGAAAGAACTACGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAG
GATTTCAATTCGAAAAATATGCTGCAAGTTGGAAAAATGCTGCAAGGATTTCAATTCCAGAGCACACGAAGGGCTTGA
Protein sequenceShow/hide protein sequence
MSSRPSAFDALMSGAQAAAKRSLSSLALESTPPIESQGGNSTSTSDNHGGPHLGKFEDAVNLGETKLRQDNGGGVGTKNGVAMNKTCATDVQERTTKLKSSIPELKKKAK
DFNSKNMLQVGKMLQGFQFQSTRRA