; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008887 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008887
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr9:31779102..31779407
RNA-Seq ExpressionLag0008887
SyntenyLag0008887
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU33092.1 hypothetical protein TSUD_259430 [Trifolium subterraneum]3.4e-0632.35Show/hide
Query:  MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVW--NAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHS
        +E   ++ + +   +V ++GNG +T F +  WI  +PL+  FP L+ LS  K + V + W  N  N  W     RNL   E    A+L + L+ + LS  
Subjt:  MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVW--NAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHS

Query:  ED
        ED
Subjt:  ED

KAG9449628.1 hypothetical protein H6P81_009593 [Aristolochia fimbriata]5.2e-0736.78Show/hide
Query:  LITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLS
        ++T  I H + +G  TFF T+ WI ++PL T +P LY LS      V          W+L+L RNL D+E  E A++ L L+ +  S
Subjt:  LITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLS

MCI27325.1 putative non-LTR retroelement reverse transcriptase [Trifolium medium]3.1e-0740.38Show/hide
Query:  MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEV--WNAPNL-FWDLKLGRNLKDSEAAEWAELSLDLDPISLSH
        +E   +A   I   IV +LGNG  T F T+ W+  SPL  +FP LY LS  K+A V E+   +  N+  W+L+  RNL   E  E + L + LD + LS+
Subjt:  MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEV--WNAPNL-FWDLKLGRNLKDSEAAEWAELSLDLDPISLSH

Query:  SEDS
         EDS
Subjt:  SEDS

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-0636.56Show/hide
Query:  HLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS
        HL++ +I     NG N  F  + W  NSPL+  +P L+ LS  +   +K++WN   + WDLK  R L+D E   WAEL   L+     +  DS
Subjt:  HLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS

XP_038891595.1 uncharacterized protein LOC120080986 [Benincasa hispida]5.6e-0940.21Show/hide
Query:  CQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS
        CQ   L+ SRI H LG+G +T    + W+N   L+  FP LY+L++   A +  +WN+ +  WDL L  NL + E AEW  LS  L  + L  S DS
Subjt:  CQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS

TrEMBL top hitse value%identityAlignment
A0A2Z6N8G2 Reverse transcriptase domain-containing protein1.6e-0632.35Show/hide
Query:  MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVW--NAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHS
        +E   ++ + +   +V ++GNG +T F +  WI  +PL+  FP L+ LS  K + V + W  N  N  W     RNL   E    A+L + L+ + LS  
Subjt:  MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVW--NAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHS

Query:  ED
        ED
Subjt:  ED

A0A392QVP8 Putative non-LTR retroelement reverse transcriptase (Fragment)1.5e-0740.38Show/hide
Query:  MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEV--WNAPNL-FWDLKLGRNLKDSEAAEWAELSLDLDPISLSH
        +E   +A   I   IV +LGNG  T F T+ W+  SPL  +FP LY LS  K+A V E+   +  N+  W+L+  RNL   E  E + L + LD + LS+
Subjt:  MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEV--WNAPNL-FWDLKLGRNLKDSEAAEWAELSLDLDPISLSH

Query:  SEDS
         EDS
Subjt:  SEDS

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein9.6e-0736.56Show/hide
Query:  HLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS
        HL++ +I     NG N  F  + W  NSPL+  +P L+ LS  +   +K++WN   + WDLK  R L+D E   WAEL   L+     +  DS
Subjt:  HLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein2.1e-0630.93Show/hide
Query:  CQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS
        C+        +  ++ NG +  F  + W  NSPL++ +P LY LS  K + ++++WN   + WDL   R L++ E   WAEL   L+     +  DS
Subjt:  CQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS

A0A6A2WFH9 O-fucosyltransferase family protein2.1e-0638.82Show/hide
Query:  QLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVW--NAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSED
        ++GNGE   F  + W+ + PL  RFP ++ LS  K   V E    ++   FWD+KL RNL D E  +W +L   L   SLS  +D
Subjt:  QLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVW--NAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAACATTGTCAAGCATCACACCTCATCACCAGCCGAATAGTCCACCAGCTTGGAAACGGTGAGAACACTTTTTTCTGCACAAATCCTTGGATTAACAATTCCCC
GCTGGCTACTAGATTTCCCCTTCTCTACCAACTTTCCCGTTGCAAAATAGCATTTGTCAAAGAAGTTTGGAATGCTCCGAATCTTTTTTGGGACCTCAAACTGGGAAGGA
ACTTGAAAGACTCTGAGGCTGCAGAATGGGCTGAACTTAGCTTGGATCTTGACCCCATTTCTTTATCTCATTCAGAGGACTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAACATTGTCAAGCATCACACCTCATCACCAGCCGAATAGTCCACCAGCTTGGAAACGGTGAGAACACTTTTTTCTGCACAAATCCTTGGATTAACAATTCCCC
GCTGGCTACTAGATTTCCCCTTCTCTACCAACTTTCCCGTTGCAAAATAGCATTTGTCAAAGAAGTTTGGAATGCTCCGAATCTTTTTTGGGACCTCAAACTGGGAAGGA
ACTTGAAAGACTCTGAGGCTGCAGAATGGGCTGAACTTAGCTTGGATCTTGACCCCATTTCTTTATCTCATTCAGAGGACTCTTAG
Protein sequenceShow/hide protein sequence
MEEHCQASHLITSRIVHQLGNGENTFFCTNPWINNSPLATRFPLLYQLSRCKIAFVKEVWNAPNLFWDLKLGRNLKDSEAAEWAELSLDLDPISLSHSEDS