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Lag0008932 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008932
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionC2H2-type domain-containing protein
Genome locationchr9:32614353..32615266
RNA-Seq ExpressionLag0008932
SyntenyLag0008932
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6757567.1 hypothetical protein POTOM_037883 [Populus tomentosa]3.1e-0667.86Show/hide
Query:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTPAK
        M ASSSS P FG+REE Q   QQ +QQHSSTP++SS  +P  PQKKKRNQPGTP+K
Subjt:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTPAK

XP_004140400.1 protein indeterminate-domain 5, chloroplastic isoform X1 [Cucumis sativus]1.1e-0672.41Show/hide
Query:  MVASSSSVPLFGVREEAQMR---PQQQQQQHSSTPSNSSTASPL-QPQKKKRNQPGTP
        M ASSSSVPLFGVREE QMR   P Q Q    S PSNSSTA P   PQKKKRNQPGTP
Subjt:  MVASSSSVPLFGVREEAQMR---PQQQQQQHSSTPSNSSTASPL-QPQKKKRNQPGTP

XP_008460216.1 PREDICTED: protein indeterminate-domain 5, chloroplastic [Cucumis melo]1.1e-0672.41Show/hide
Query:  MVASSSSVPLFGVREEAQMR---PQQQQQQHSSTPSNSSTASPL-QPQKKKRNQPGTP
        M ASSSSVPLFGVREE QMR   P Q Q    S PSNSSTA P   PQKKKRNQPGTP
Subjt:  MVASSSSVPLFGVREEAQMR---PQQQQQQHSSTPSNSSTASPL-QPQKKKRNQPGTP

XP_021909848.1 protein indeterminate-domain 5, chloroplastic isoform X1 [Carica papaya]6.9e-0670.37Show/hide
Query:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTP
        M ASSSSVPLFG+REE Q   Q +QQQHSSTP+ S+  +P QP KKKRNQPGTP
Subjt:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTP

XP_021909849.1 protein indeterminate-domain 5, chloroplastic isoform X2 [Carica papaya]6.9e-0670.37Show/hide
Query:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTP
        M ASSSSVPLFG+REE Q   Q +QQQHSSTP+ S+  +P QP KKKRNQPGTP
Subjt:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTP

TrEMBL top hitse value%identityAlignment
A0A0A0KMB9 C2H2-type domain-containing protein5.1e-0772.41Show/hide
Query:  MVASSSSVPLFGVREEAQMR---PQQQQQQHSSTPSNSSTASPL-QPQKKKRNQPGTP
        M ASSSSVPLFGVREE QMR   P Q Q    S PSNSSTA P   PQKKKRNQPGTP
Subjt:  MVASSSSVPLFGVREEAQMR---PQQQQQQHSSTPSNSSTASPL-QPQKKKRNQPGTP

A0A1S3CCG7 protein indeterminate-domain 5, chloroplastic5.1e-0772.41Show/hide
Query:  MVASSSSVPLFGVREEAQMR---PQQQQQQHSSTPSNSSTASPL-QPQKKKRNQPGTP
        M ASSSSVPLFGVREE QMR   P Q Q    S PSNSSTA P   PQKKKRNQPGTP
Subjt:  MVASSSSVPLFGVREEAQMR---PQQQQQQHSSTPSNSSTASPL-QPQKKKRNQPGTP

A0A2P2LXR5 Uncharacterized protein1.1e-0663.16Show/hide
Query:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTPAKH
        M ASSSSVP FG+R+E Q    Q +QQHSSTP++SS  +P   QKKKRNQPGTP+K+
Subjt:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTPAKH

A0A6J1HPQ0 protein indeterminate-domain 5, chloroplastic-like4.4e-0670.37Show/hide
Query:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTP
        M ASSSSVPLFG R+EAQMR QQQQQQ     SNS   S + P KKKRNQPGTP
Subjt:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTP

U5G1I0 C2H2-type domain-containing protein4.4e-0668.52Show/hide
Query:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTP
        M ASSSS P FG+REE Q   QQ +QQHSSTP++SS  +P  PQKKKRNQPGTP
Subjt:  MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGCATCTTCTTCATCAGTTCCACTTTTTGGAGTTCGTGAAGAAGCCCAGATGAGACCTCAGCAGCAACAACAACAACATTCCTCAACTCCCTCTAATTCTTCGAC
TGCCTCGCCTCTTCAACCCCAGAAGAAAAAGAGGAACCAACCAGGAACTCCAGCAAAACACCAAGCGGCTGCCGGGATAAAAAAACAAGCCGAAGCCACCCCCAACGCAC
TCCAAAGCCACACGTATTCGAAATCGCCGCTGCCACAGACATCGCGCACTCCATTTCCACCATCGCCCACCGCCGGGAAGAAATTGAGGGAGGTTAATGATAAGATGTTT
GATAATGGTGAAGAAAAGAAGGAGAGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGCATCTTCTTCATCAGTTCCACTTTTTGGAGTTCGTGAAGAAGCCCAGATGAGACCTCAGCAGCAACAACAACAACATTCCTCAACTCCCTCTAATTCTTCGAC
TGCCTCGCCTCTTCAACCCCAGAAGAAAAAGAGGAACCAACCAGGAACTCCAGCAAAACACCAAGCGGCTGCCGGGATAAAAAAACAAGCCGAAGCCACCCCCAACGCAC
TCCAAAGCCACACGTATTCGAAATCGCCGCTGCCACAGACATCGCGCACTCCATTTCCACCATCGCCCACCGCCGGGAAGAAATTGAGGGAGGTTAATGATAAGATGTTT
GATAATGGTGAAGAAAAGAAGGAGAGGAGATGA
Protein sequenceShow/hide protein sequence
MVASSSSVPLFGVREEAQMRPQQQQQQHSSTPSNSSTASPLQPQKKKRNQPGTPAKHQAAAGIKKQAEATPNALQSHTYSKSPLPQTSRTPFPPSPTAGKKLREVNDKMF
DNGEEKKERR