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Lag0008942 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008942
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 3, chloroplastic
Genome locationchr9:32875519..32875929
RNA-Seq ExpressionLag0008942
SyntenyLag0008942
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059320.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa]2.7e-4481.08Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        ME LHLGSY LSSSSSFRSFNYITNS+HTL  FR LT RR +++ VG VPQSQSE  +P+EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        NI+LYGPY  F
Subjt:  NIELYGPYVSF
XP_004141758.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus]1.2e-4481.08Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        MEALHLGSY L SSSSFRSFNYITNS+HTL  FRPLT RR +++ VG VPQSQSE ++P+EPPIVD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        NI+LYGPY  F
Subjt:  NIELYGPYVSF
XP_022145222.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia]1.0e-4685.59Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        MEA HLGSYRLSSSSS RSFNYITNSTHTL   RPL  RR KI+ VG VPQSQSET++P+EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        NIELYGPY  F
Subjt:  NIELYGPYVSF
XP_022964207.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata]1.6e-4483.78Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        MEALHLG      SSSFRSFNYITNSTHTLN FRPLT RR KI+ VG VPQSQS+TSEP EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        N+ELYGPY  F
Subjt:  NIELYGPYVSF
XP_038899995.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]1.1e-4582.88Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        MEALHLGSYRLSSSSSFRSFNYIT+S+ TL  FRPL+ RR  I+ VG VPQ+QSET++P+EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        NIELYGPY  F
Subjt:  NIELYGPYVSF
TrEMBL top hitse value%identityAlignment
A0A0A0KC78 2Fe-2S ferredoxin-type domain-containing protein5.9e-4581.08Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        MEALHLGSY L SSSSFRSFNYITNS+HTL  FRPLT RR +++ VG VPQSQSE ++P+EPPIVD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        NI+LYGPY  F
Subjt:  NIELYGPYVSF
A0A5A7UW39 Photosynthetic NDH subunit of subcomplex B 31.3e-4481.08Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        ME LHLGSY LSSSSSFRSFNYITNS+HTL  FR LT RR +++ VG VPQSQSE  +P+EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        NI+LYGPY  F
Subjt:  NIELYGPYVSF
A0A6J1CVZ7 photosynthetic NDH subunit of subcomplex B 3, chloroplastic4.8e-4785.59Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        MEA HLGSYRLSSSSS RSFNYITNSTHTL   RPL  RR KI+ VG VPQSQSET++P+EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        NIELYGPY  F
Subjt:  NIELYGPYVSF
A0A6J1HH80 photosynthetic NDH subunit of subcomplex B 3, chloroplastic7.7e-4583.78Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        MEALHLG      SSSFRSFNYITNSTHTLN FRPLT RR KI+ VG VPQSQS+TSEP EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        N+ELYGPY  F
Subjt:  NIELYGPYVSF
A0A6J1KDJ1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic7.7e-4583.78Show/hide
Query:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
        MEALHLG      SSSFRSFNYITNSTHTLN FRPLT RR KI+ VG VPQSQS+TSEP EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS
Subjt:  MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDS

Query:  NIELYGPYVSF
        N+ELYGPY  F
Subjt:  NIELYGPYVSF
SwissProt top hitse value%identityAlignment
Q9LU21 Photosynthetic NDH subunit of subcomplex B 3, chloroplastic5.2e-2253.77Show/hide
Query:  GSYRLSSSSSFRSFNYITNSTHTLNHF---RPLTCRRLKIKVVGIVPQSQSETS-EPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI
        GS  ++S     SF++ T      ++F   +    R   ++ +   P SQ   + EPDEPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNI
Subjt:  GSYRLSSSSSFRSFNYITNSTHTLNHF---RPLTCRRLKIKVVGIVPQSQSETS-EPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI

Query:  ELYGPY
        ELYGPY
Subjt:  ELYGPY
Arabidopsis top hitse value%identityAlignment
AT3G16250.1 NDH-dependent cyclic electron flow 13.7e-2353.77Show/hide
Query:  GSYRLSSSSSFRSFNYITNSTHTLNHF---RPLTCRRLKIKVVGIVPQSQSETS-EPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI
        GS  ++S     SF++ T      ++F   +    R   ++ +   P SQ   + EPDEPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNI
Subjt:  GSYRLSSSSSFRSFNYITNSTHTLNHF---RPLTCRRLKIKVVGIVPQSQSETS-EPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI

Query:  ELYGPY
        ELYGPY
Subjt:  ELYGPY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTCTCCATCTGGGTTCATATCGTTTATCATCTTCATCCTCCTTTCGCTCATTCAACTACATTACAAATTCCACTCACACCCTTAATCACTTTCGACCTCTAAC
TTGCCGTAGACTCAAAATCAAAGTTGTTGGCATTGTTCCACAGAGCCAATCCGAAACCAGTGAGCCTGATGAGCCTCCAATTGTTGATTTTGCTTTCGTTAATTCTGTTT
TGCTTCCCGATGGAACTCCTGATGTGCACTTCCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGCTTGATTCCAATATTGAATTGTATGGGCCTTATGTGAGT
TTCCCTGTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCTCTCCATCTGGGTTCATATCGTTTATCATCTTCATCCTCCTTTCGCTCATTCAACTACATTACAAATTCCACTCACACCCTTAATCACTTTCGACCTCTAAC
TTGCCGTAGACTCAAAATCAAAGTTGTTGGCATTGTTCCACAGAGCCAATCCGAAACCAGTGAGCCTGATGAGCCTCCAATTGTTGATTTTGCTTTCGTTAATTCTGTTT
TGCTTCCCGATGGAACTCCTGATGTGCACTTCCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGCTTGATTCCAATATTGAATTGTATGGGCCTTATGTGAGT
TTCCCTGTTCCTTGA
Protein sequenceShow/hide protein sequence
MEALHLGSYRLSSSSSFRSFNYITNSTHTLNHFRPLTCRRLKIKVVGIVPQSQSETSEPDEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVS
FPVP