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Lag0008949 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008949
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr9:32907345..32908047
RNA-Seq ExpressionLag0008949
SyntenyLag0008949
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4351405.1 hypothetical protein F8388_001025, partial [Cannabis sativa]1.9e-0937.23Show/hide
Query:  GTFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNV-------------VDK
        G     RT+ R   P    FLSETK        ++R++   + F V   G SGGL LLWN    +++KSFS+GHIDA +K   +                
Subjt:  GTFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNV-------------VDK

Query:  RKDSWTLLKRLFEGDLLRLPWIIGGTSMRSSIIMKKK
        R DSW LL RL    L  LPWI GG       I +KK
Subjt:  RKDSWTLLKRLFEGDLLRLPWIIGGTSMRSSIIMKKK

OMO57964.1 reverse transcriptase [Corchorus capsularis]1.1e-0935.19Show/hide
Query:  SDFTNTDQIVCFEGIKEISTKAGTFEV--WRTLG----------RSEIPCWFF---FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTS
        SD  N  Q     G+++  +  GT  +  W   G          R  + C  F   FL ETKC+   +  L+  L  DS F V S G +GGL LLW ++S
Subjt:  SDFTNTDQIVCFEGIKEISTKAGTFEV--WRTLG----------RSEIPCWFF---FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTS

Query:  HITIKSFSLGHIDATIKVDN-------------VVDKRKDSWTLLKRLFEGDLLRLPWIIGG
         ++I SFSL HIDA I  ++             VV +R +SW LLK L      +LPWI  G
Subjt:  HITIKSFSLGHIDATIKVDN-------------VVDKRKDSWTLLKRLFEGDLLRLPWIIGG

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.4e-1243.9Show/hide
Query:  TFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIK------------VDNVVDKRK
        TF   R L R   P    FLSETK +  +  + KREL  D C  V S G SGGL LLWNS S++ I+S S GHID+ I              +    KR 
Subjt:  TFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIK------------VDNVVDKRK

Query:  DSWTLLKRLFEGDLLRLPWIIGG
         SW LL+RL    ++ LPWIIGG
Subjt:  DSWTLLKRLFEGDLLRLPWIIGG

XP_028075737.1 uncharacterized protein LOC114277953 [Camellia sinensis]4.9e-1036.8Show/hide
Query:  TFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDN--------------VVDK
        T    + L + E+P    FL ETK D R + +++ +L L  CF V   G SGGL LLW     + IKSFS GH+D+ I  ++              +   
Subjt:  TFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDN--------------VVDK

Query:  RKDSWTLLKRLFEGDLLRLPWIIGG
        R DSW LL+RL   D + LPW+  G
Subjt:  RKDSWTLLKRLFEGDLLRLPWIIGG

XP_042950313.1 uncharacterized protein LOC122282426 [Carya illinoinensis]1.4e-0938.68Show/hide
Query:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVV-------------DKRKDSWTLLKRLFEGDLLRL
        FL ETK  T+ +  LK +L   +CF V S+G SGGL LLWNS   + ++SFS  HID  IK+D+++              +R  +W L++ L    + +L
Subjt:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVV-------------DKRKDSWTLLKRLFEGDLLRL

Query:  PWIIGG
        PW++GG
Subjt:  PWIIGG

TrEMBL top hitse value%identityAlignment
A0A2N9HWG1 Reverse transcriptase domain-containing protein1.1e-1037.74Show/hide
Query:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDN-------------VVDKRKDSWTLLKRLFEGDLLRL
        FL ETK D R +  ++ +L+   CF V S G SGGL LLWN    +TI++FS+ HIDA + +               +V +R++SW LL +L    ++ L
Subjt:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDN-------------VVDKRKDSWTLLKRLFEGDLLRL

Query:  PWIIGG
        PW++ G
Subjt:  PWIIGG

A0A6J1DUG8 uncharacterized protein LOC1110241356.7e-1343.9Show/hide
Query:  TFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIK------------VDNVVDKRK
        TF   R L R   P    FLSETK +  +  + KREL  D C  V S G SGGL LLWNS S++ I+S S GHID+ I              +    KR 
Subjt:  TFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIK------------VDNVVDKRK

Query:  DSWTLLKRLFEGDLLRLPWIIGG
         SW LL+RL    ++ LPWIIGG
Subjt:  DSWTLLKRLFEGDLLRLPWIIGG

A0A803P941 Uncharacterized protein4.8e-1136.59Show/hide
Query:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVV---------------DKRKDSWTLLKRLFEGDLL
        FLSET+ +   + +++  L  DSCFVV +KG SGGL LLW  +  + IKSF++ HIDA   V+N +                 RK +W L++RL   ++L
Subjt:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVV---------------DKRKDSWTLLKRLFEGDLL

Query:  RLPWIIGGTSMRSSIIMKKKRAW
        + PW+ GG    + I+++K++ W
Subjt:  RLPWIIGGTSMRSSIIMKKKRAW

A0A803P9R9 Uncharacterized protein2.4e-1039.17Show/hide
Query:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVV---------------DKRKDSWTLLKRLFEGDLL
        FL+ET+ +   + +++  L  DSCFVV ++G SGGL LLW  +  +TI SF++ HIDA  KV+N +                 RK SW L++RL   D+ 
Subjt:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVV---------------DKRKDSWTLLKRLFEGDLL

Query:  RLPWIIGGTSMRSSIIMKKK
        + PWI GG     + IMK+K
Subjt:  RLPWIIGGTSMRSSIIMKKK

A0A803P9U4 Uncharacterized protein3.1e-1039.81Show/hide
Query:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVV---------------DKRKDSWTLLKRLFEGDLL
        FL+ET+ +   + +++  L  DSCFVV ++G SGGL LLW  +  +TI SF++ HIDA  KV+N +                 RK SW L++RL   D+ 
Subjt:  FLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVV---------------DKRKDSWTLLKRLFEGDLL

Query:  RLPWIIGG
        + PWI GG
Subjt:  RLPWIIGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGATTTTACCAACACGGATCAGATTGTTTGCTTCGAAGGGATCAAAGAGATATCGACGAAGGCTGGAACGTTCGAGGTTTGGAGAACCCTTGGACGTTCTGAGAT
CCCCTGTTGGTTTTTCTTTTTATCAGAAACAAAGTGTGATACCAGAATATTAGCAAAGTTGAAAAGGGAATTGAAGTTGGATAGCTGTTTTGTGGTCCTGAGCAAGGGGA
ACAGTGGTGGCTTGACTCTCCTTTGGAATTCTACCTCCCATATTACTATTAAGTCCTTTTCATTAGGCCATATTGATGCTACTATAAAGGTTGATAATGTAGTGGACAAG
AGAAAGGACTCGTGGACTCTGTTAAAAAGGTTGTTCGAGGGAGATTTGTTAAGGCTGCCCTGGATTATAGGGGGGACTTCAATGAGATCCTCTATAATAATGAAAAAGAA
GAGGGCTTGGATAGAAGAGATTCTCAAATGGATGACTTCTGTGAAGTTGTTGATTCCTGCCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGATTTTACCAACACGGATCAGATTGTTTGCTTCGAAGGGATCAAAGAGATATCGACGAAGGCTGGAACGTTCGAGGTTTGGAGAACCCTTGGACGTTCTGAGAT
CCCCTGTTGGTTTTTCTTTTTATCAGAAACAAAGTGTGATACCAGAATATTAGCAAAGTTGAAAAGGGAATTGAAGTTGGATAGCTGTTTTGTGGTCCTGAGCAAGGGGA
ACAGTGGTGGCTTGACTCTCCTTTGGAATTCTACCTCCCATATTACTATTAAGTCCTTTTCATTAGGCCATATTGATGCTACTATAAAGGTTGATAATGTAGTGGACAAG
AGAAAGGACTCGTGGACTCTGTTAAAAAGGTTGTTCGAGGGAGATTTGTTAAGGCTGCCCTGGATTATAGGGGGGACTTCAATGAGATCCTCTATAATAATGAAAAAGAA
GAGGGCTTGGATAGAAGAGATTCTCAAATGGATGACTTCTGTGAAGTTGTTGATTCCTGCCAGCTGA
Protein sequenceShow/hide protein sequence
MSDFTNTDQIVCFEGIKEISTKAGTFEVWRTLGRSEIPCWFFFLSETKCDTRILAKLKRELKLDSCFVVLSKGNSGGLTLLWNSTSHITIKSFSLGHIDATIKVDNVVDK
RKDSWTLLKRLFEGDLLRLPWIIGGTSMRSSIIMKKKRAWIEEILKWMTSVKLLIPAS