; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008954 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008954
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr9:33017241..33018290
RNA-Seq ExpressionLag0008954
SyntenyLag0008954
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]4.9e-3041.86Show/hide
Query:  MKAEVPQKFKM-----------------------DFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQ
        MK +VP KFK+                       D +G+++AIRCR F FT+TGS R WF++LKR+SIS FK+LARAF  QF G   + +P   LLT+KQ
Subjt:  MKAEVPQKFKM-----------------------DFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQ

Query:  QPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDER
        +  ESL+DY+ RFN E LQVEG ++   L+   +G++DE+L+ S GK    T++E  S+AQ YM V EL+ SK+      +   +D+N+   KR+R  E+
Subjt:  QPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDER

Query:  GRG----RPNNGRGR
          G    R ++G+GR
Subjt:  GRG----RPNNGRGR

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]1.3e-3041.46Show/hide
Query:  EEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLT
        EE MK +VP KFK                       MD +GVS+A++CR F  T++GSAR WF +LKR SIS FK LA+AF  QF+G R + +P   LLT
Subjt:  EEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLT

Query:  VKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRT
        +KQ+  ESL DY+ RFN+E LQVEG +   +L+A  + + DE L  S GK  P T++E +S+AQKYM   E   SK+  +  +   + + +  K +  R 
Subjt:  VKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRT

Query:  DERGR
        ++R R
Subjt:  DERGR

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]6.8e-3246.33Show/hide
Query:  DFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITA
        D + + +AIRCR F FT+TGSAR+WF +LKR SIS FK+LA AF  QF+G R + KP   LLT+KQ+  ESL++Y+ RFN+E LQVEG ++  AL+A  +
Subjt:  DFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITA

Query:  GLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRGRPNNGRGR
        G++DERL+ S GK  P T+ E +S+AQKYM   EL+   +  +  + + S+    + +KR R+      R ++G GR
Subjt:  GLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRGRPNNGRGR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]5.4e-3745.29Show/hide
Query:  DLEELVDQVDPSVTEEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFM
        DLEEL+DQ D   TEE M+ +VP KFK                       MD +GVS+A+RCR F  T+ GSAR WF +LKR SIS FK LARAF  QF+
Subjt:  DLEELVDQVDPSVTEEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFM

Query:  GAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKK----SRQEH
        G R + +P   LLT+KQ+  ESLRDY+ RFN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +S+AQ+YM   E   SK+     R + 
Subjt:  GAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKK----SRQEH

Query:  KRHSSSD--HNSKKDKRQRTDER
        KR  S D    S+ +KR R+ ++
Subjt:  KRHSSSD--HNSKKDKRQRTDER

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]3.9e-3541.22Show/hide
Query:  LNALKELRNPQGDLQK--SKDRGDQDLEELVDQVDPSVTEEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARH
        LN  K +  P+   ++   K++G  DLEEL+ Q D   TEE M+ +VP KFK                       MD +GVSDAIRCR F  T+ GSAR 
Subjt:  LNALKELRNPQGDLQK--SKDRGDQDLEELVDQVDPSVTEEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARH

Query:  WFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVS
        WF +LKR SIS FK LARAF  QF+G R + +P   LLT+KQ+  ESL DY+ RFN+E LQ+EG ++  +L+A  +G+ DE L  S  K  P T++E +S
Subjt:  WFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVS

Query:  QAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRG
        +AQ+YM   E   SK+     +     + +  K +  R ++R RG
Subjt:  QAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRG

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166192.4e-3041.86Show/hide
Query:  MKAEVPQKFKM-----------------------DFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQ
        MK +VP KFK+                       D +G+++AIRCR F FT+TGS R WF++LKR+SIS FK+LARAF  QF G   + +P   LLT+KQ
Subjt:  MKAEVPQKFKM-----------------------DFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQ

Query:  QPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDER
        +  ESL+DY+ RFN E LQVEG ++   L+   +G++DE+L+ S GK    T++E  S+AQ YM V EL+ SK+      +   +D+N+   KR+R  E+
Subjt:  QPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDER

Query:  GRG----RPNNGRGR
          G    R ++G+GR
Subjt:  GRG----RPNNGRGR

A0A6J1D7D2 uncharacterized protein LOC1110183076.2e-3141.46Show/hide
Query:  EEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLT
        EE MK +VP KFK                       MD +GVS+A++CR F  T++GSAR WF +LKR SIS FK LA+AF  QF+G R + +P   LLT
Subjt:  EEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLT

Query:  VKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRT
        +KQ+  ESL DY+ RFN+E LQVEG +   +L+A  + + DE L  S GK  P T++E +S+AQKYM   E   SK+  +  +   + + +  K +  R 
Subjt:  VKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRT

Query:  DERGR
        ++R R
Subjt:  DERGR

A0A6J1DWY0 uncharacterized protein LOC1110252932.6e-3745.29Show/hide
Query:  DLEELVDQVDPSVTEEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFM
        DLEEL+DQ D   TEE M+ +VP KFK                       MD +GVS+A+RCR F  T+ GSAR WF +LKR SIS FK LARAF  QF+
Subjt:  DLEELVDQVDPSVTEEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFM

Query:  GAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKK----SRQEH
        G R + +P   LLT+KQ+  ESLRDY+ RFN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +S+AQ+YM   E   SK+     R + 
Subjt:  GAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKK----SRQEH

Query:  KRHSSSD--HNSKKDKRQRTDER
        KR  S D    S+ +KR R+ ++
Subjt:  KRHSSSD--HNSKKDKRQRTDER

A0A6J1DZ49 uncharacterized protein LOC1110248513.3e-3246.33Show/hide
Query:  DFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITA
        D + + +AIRCR F FT+TGSAR+WF +LKR SIS FK+LA AF  QF+G R + KP   LLT+KQ+  ESL++Y+ RFN+E LQVEG ++  AL+A  +
Subjt:  DFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITA

Query:  GLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRGRPNNGRGR
        G++DERL+ S GK  P T+ E +S+AQKYM   EL+   +  +  + + S+    + +KR R+      R ++G GR
Subjt:  GLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRGRPNNGRGR

A0A6J1E1E7 uncharacterized protein LOC1110255481.9e-3541.22Show/hide
Query:  LNALKELRNPQGDLQK--SKDRGDQDLEELVDQVDPSVTEEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARH
        LN  K +  P+   ++   K++G  DLEEL+ Q D   TEE M+ +VP KFK                       MD +GVSDAIRCR F  T+ GSAR 
Subjt:  LNALKELRNPQGDLQK--SKDRGDQDLEELVDQVDPSVTEEFMKAEVPQKFK-----------------------MDFHGVSDAIRCRAFFFTVTGSARH

Query:  WFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVS
        WF +LKR SIS FK LARAF  QF+G R + +P   LLT+KQ+  ESL DY+ RFN+E LQ+EG ++  +L+A  +G+ DE L  S  K  P T++E +S
Subjt:  WFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRDYIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVS

Query:  QAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRG
        +AQ+YM   E   SK+     +     + +  K +  R ++R RG
Subjt:  QAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATCAAGATCAAGGGACTTAAACCTACTGATCGTGCAATTTTGAAGAGCCCAGAGTCAAGCACACTTAAGGGACGCAAGTACACAGTTTCTACCCCAAGCTACAG
TCATACTAAGACAGACCTGAGGAATCTAATCGAGGAGAAGCGCAGAAGTGCCAAAACTGCCGAATTCGAGGTCAGAGCTGCCGAAGCTGGAGCCAGGGCTGCCGAGGCCG
AGGCCGAGGCTAGGTTGGCCGAGGTCGAGGCCAAGAAGGATAACTTCCCTTGGAAGACTGAGCTTCTGAACGCACTAAAGGAGCTCAGAAATCCTCAGGGAGACCTGCAG
AAGTCAAAGGACCGTGGAGACCAAGACTTGGAAGAATTAGTCGACCAAGTCGACCCGTCCGTCACAGAAGAATTCATGAAAGCCGAGGTGCCCCAAAAGTTCAAGATGGA
CTTCCACGGCGTCTCAGATGCAATCAGGTGCCGTGCATTCTTTTTCACTGTAACAGGATCAGCAAGGCATTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTGTTTCA
AGGATTTAGCCCGAGCATTCTTTGCACAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACAGTCAAACAGCAGCCAGGTGAGAGCTTGCGTGAT
TACATAATGCGTTTTAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTAGTAGCCATCACAGCCGGATTAGAAGACGAAAGACTGCTCAATTCAAT
AGGTAAGAGCCAACCTCAAACCTATGCAGAGTTCGTCTCCCAGGCACAGAAATACATGCGTGTAGAGGAGTTGCTCAAGTCAAAGAAGTCGAGACAAGAACACAAAAGAC
ATTCTTCATCTGACCACAACAGTAAAAAGGACAAGAGGCAGCGAACAGACGAAAGAGGTCGAGGCCGACCAAACAATGGCCGAGGCCGACCAGAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACCATCAAGATCAAGGGACTTAAACCTACTGATCGTGCAATTTTGAAGAGCCCAGAGTCAAGCACACTTAAGGGACGCAAGTACACAGTTTCTACCCCAAGCTACAG
TCATACTAAGACAGACCTGAGGAATCTAATCGAGGAGAAGCGCAGAAGTGCCAAAACTGCCGAATTCGAGGTCAGAGCTGCCGAAGCTGGAGCCAGGGCTGCCGAGGCCG
AGGCCGAGGCTAGGTTGGCCGAGGTCGAGGCCAAGAAGGATAACTTCCCTTGGAAGACTGAGCTTCTGAACGCACTAAAGGAGCTCAGAAATCCTCAGGGAGACCTGCAG
AAGTCAAAGGACCGTGGAGACCAAGACTTGGAAGAATTAGTCGACCAAGTCGACCCGTCCGTCACAGAAGAATTCATGAAAGCCGAGGTGCCCCAAAAGTTCAAGATGGA
CTTCCACGGCGTCTCAGATGCAATCAGGTGCCGTGCATTCTTTTTCACTGTAACAGGATCAGCAAGGCATTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTGTTTCA
AGGATTTAGCCCGAGCATTCTTTGCACAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACAGTCAAACAGCAGCCAGGTGAGAGCTTGCGTGAT
TACATAATGCGTTTTAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTAGTAGCCATCACAGCCGGATTAGAAGACGAAAGACTGCTCAATTCAAT
AGGTAAGAGCCAACCTCAAACCTATGCAGAGTTCGTCTCCCAGGCACAGAAATACATGCGTGTAGAGGAGTTGCTCAAGTCAAAGAAGTCGAGACAAGAACACAAAAGAC
ATTCTTCATCTGACCACAACAGTAAAAAGGACAAGAGGCAGCGAACAGACGAAAGAGGTCGAGGCCGACCAAACAATGGCCGAGGCCGACCAGAACAATGA
Protein sequenceShow/hide protein sequence
MTIKIKGLKPTDRAILKSPESSTLKGRKYTVSTPSYSHTKTDLRNLIEEKRRSAKTAEFEVRAAEAGARAAEAEAEARLAEVEAKKDNFPWKTELLNALKELRNPQGDLQ
KSKDRGDQDLEELVDQVDPSVTEEFMKAEVPQKFKMDFHGVSDAIRCRAFFFTVTGSARHWFERLKRRSISCFKDLARAFFAQFMGAREQRKPHINLLTVKQQPGESLRD
YIMRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPQTYAEFVSQAQKYMRVEELLKSKKSRQEHKRHSSSDHNSKKDKRQRTDERGRGRPNNGRGRPEQ