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Lag0008969 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008969
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:33166463..33166930
RNA-Seq ExpressionLag0008969
SyntenyLag0008969
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4350693.1 hypothetical protein F8388_003414 [Cannabis sativa]4.9e-2035.48Show/hide
Query:  SSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLWWCW
        S+   ++KWWK +W+  +P ++K+F WR+ H+ LP K NL+ RGMEV   C  C RY+E++ HA+W C   +  W+  P++ +      GS  D+L    
Subjt:  SSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLWWCW

Query:  KGMTWEVFEDFVVMCWWVWSRRNK
        + +  + FED + + W +W  RN+
Subjt:  KGMTWEVFEDFVVMCWWVWSRRNK

KAF4354438.1 hypothetical protein G4B88_010062 [Cannabis sativa]8.0e-2337.88Show/hide
Query:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL
        E A+ S++ K++ WWKF+W  ++  K+K F+W++F+  +PTK  LRKRGM +   C RC++ EE I HA+W C   +K W+    +P+     G   +  
Subjt:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL

Query:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLF
        LWW W+ ++ E F  F    W +W RRN+ +F
Subjt:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLF

KAF4380543.1 hypothetical protein G4B88_027634 [Cannabis sativa]4.9e-2035.48Show/hide
Query:  SSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLWWCW
        S+   ++KWWK +W+  +P ++K+F WR+ H+ LP K NL+ RGMEV   C  C RY+E++ HA+W C   +  W+  P++ +      GS  D+L    
Subjt:  SSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLWWCW

Query:  KGMTWEVFEDFVVMCWWVWSRRNK
        + +  + FED + + W +W  RN+
Subjt:  KGMTWEVFEDFVVMCWWVWSRRNK

KAF4394884.1 hypothetical protein G4B88_002761 [Cannabis sativa]2.3e-2236.57Show/hide
Query:  ASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLW
        A+ S++ K++ WWKF+W  ++  K+K F+W++F+  +PTK  LRKRGM +   C  C++ EE I HA+W C   +K W+   +       +  + ++ LW
Subjt:  ASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLW

Query:  WCWKGMTWEVFEDFVVMCWWVWSRRNKHLFGEAV
        W W+ +T E F  FV   W +W RRN ++F   V
Subjt:  WCWKGMTWEVFEDFVVMCWWVWSRRNKHLFGEAV

KAF4402710.1 hypothetical protein G4B88_012495 [Cannabis sativa]8.0e-2337.88Show/hide
Query:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL
        E A+ S++ K++ WWKF+W  ++ +K+K F+W++F+  +PTK  LRKRGM +   C RC++ EE I HA+W C   +K W+    + +     G + +  
Subjt:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL

Query:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLF
        LWW W+ ++ E F  FV   W +W RRN+ +F
Subjt:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLF

TrEMBL top hitse value%identityAlignment
A0A7J6E7M8 Uncharacterized protein3.9e-2337.88Show/hide
Query:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL
        E A+ S++ K++ WWKF+W  ++  K+K F+W++F+  +PTK  LRKRGM +   C RC++ EE I HA+W C   +K W+    +P+     G   +  
Subjt:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL

Query:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLF
        LWW W+ ++ E F  F    W +W RRN+ +F
Subjt:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLF

A0A7J6HHY1 RNase H domain-containing protein1.1e-2236.57Show/hide
Query:  ASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLW
        A+ S++ K++ WWKF+W  ++  K+K F+W++F+  +PTK  LRKRGM +   C  C++ EE I HA+W C   +K W+   +       +  + ++ LW
Subjt:  ASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLW

Query:  WCWKGMTWEVFEDFVVMCWWVWSRRNKHLFGEAV
        W W+ +T E F  FV   W +W RRN ++F   V
Subjt:  WCWKGMTWEVFEDFVVMCWWVWSRRNKHLFGEAV

A0A7J6I7R2 RNase H domain-containing protein3.9e-2337.88Show/hide
Query:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL
        E A+ S++ K++ WWKF+W  ++ +K+K F+W++F+  +PTK  LRKRGM +   C RC++ EE I HA+W C   +K W+    + +     G + +  
Subjt:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL

Query:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLF
        LWW W+ ++ E F  FV   W +W RRN+ +F
Subjt:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLF

A0A803PEX7 Uncharacterized protein3.3e-2239.23Show/hide
Query:  ASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLW
        A+ S++ K+R WWKF+W   +  K+K F+W++F+  LPTK +LRKRGM+V   C  C++ EE+I HA+W C   +K W+    + +    +  S ++ LW
Subjt:  ASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLW

Query:  WCWKGMTWEVFEDFVVMCWWVWSRRNKHLF
        W W+ ++ E F  FV   W +W RRN+ +F
Subjt:  WCWKGMTWEVFEDFVVMCWWVWSRRNKHLF

A0A803PZ98 Uncharacterized protein8.1e-2136.43Show/hide
Query:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL
        EE S+ S  +++ WWKF+W   +  K+K F+WR+F+  +PTK  L KRGM +   C  C    E I HA+W C   +  W+    FP+  P +     D+
Subjt:  EEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDL

Query:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLFGEAVLGEE
        LWW  + +  E F  F+ + W VW RRN  +F   +L E+
Subjt:  LWWCWKGMTWEVFEDFVVMCWWVWSRRNKHLFGEAVLGEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein4.5e-0839.06Show/hide
Query:  VWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWR
        +W   I  K+K F+WR     L T   L  RGM +   C RC R  ESI HA++ C  +   WR
Subjt:  VWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWR

AT3G25270.1 Ribonuclease H-like superfamily protein5.9e-0823.85Show/hide
Query:  VWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTD----LLWWCWKGMTWEVF
        +W  +   K+K F+W+L    L T  NL++R +     C RC + +E+  H  ++C  +++ WR S    +   T+G +       LL  C      ++F
Subjt:  VWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTD----LLWWCWKGMTWEVF

Query:  EDFVVMCWWVWSRRNKHLFGEAVLGEEGSM
           + + W +W  RN+ +F +  +  + ++
Subjt:  EDFVVMCWWVWSRRNKHLFGEAVLGEEGSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGATTAGGGAGGAGGCTAGTAGTTCTAGCTCGAAGAAGGTTCGTAAATGGTGGAAGTTTGTATGGGCTTGCCAGATTCCTAGTAAAGTTAAAATCTTTGTGTGGAG
ACTGTTTCATGATCTTCTCCCCACTAAGAGCAATTTGAGAAAAAGAGGAATGGAAGTGCAGAGGGGGTGTTCTCGATGTATGAGGTATGAGGAATCGATTTTCCATGCTA
TTTGGGAGTGCAAAGGATCGAGGAAATATTGGAGAGACTCTCCTTTCTTTCCCCGGCCTGGGCCAACGTCTGGTGGGAGTCCGACGGATTTACTATGGTGGTGTTGGAAA
GGTATGACATGGGAGGTTTTTGAGGATTTTGTGGTTATGTGTTGGTGGGTGTGGAGTAGGAGGAATAAGCATTTGTTTGGGGAAGCTGTTTTAGGTGAGGAGGGGAGTAT
GGGTGGTGATGGGTTACTGATTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGATTAGGGAGGAGGCTAGTAGTTCTAGCTCGAAGAAGGTTCGTAAATGGTGGAAGTTTGTATGGGCTTGCCAGATTCCTAGTAAAGTTAAAATCTTTGTGTGGAG
ACTGTTTCATGATCTTCTCCCCACTAAGAGCAATTTGAGAAAAAGAGGAATGGAAGTGCAGAGGGGGTGTTCTCGATGTATGAGGTATGAGGAATCGATTTTCCATGCTA
TTTGGGAGTGCAAAGGATCGAGGAAATATTGGAGAGACTCTCCTTTCTTTCCCCGGCCTGGGCCAACGTCTGGTGGGAGTCCGACGGATTTACTATGGTGGTGTTGGAAA
GGTATGACATGGGAGGTTTTTGAGGATTTTGTGGTTATGTGTTGGTGGGTGTGGAGTAGGAGGAATAAGCATTTGTTTGGGGAAGCTGTTTTAGGTGAGGAGGGGAGTAT
GGGTGGTGATGGGTTACTGATTATCTAG
Protein sequenceShow/hide protein sequence
MWIREEASSSSSKKVRKWWKFVWACQIPSKVKIFVWRLFHDLLPTKSNLRKRGMEVQRGCSRCMRYEESIFHAIWECKGSRKYWRDSPFFPRPGPTSGGSPTDLLWWCWK
GMTWEVFEDFVVMCWWVWSRRNKHLFGEAVLGEEGSMGGDGLLII