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Lag0008970 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008970
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:33166961..33167533
RNA-Seq ExpressionLag0008970
SyntenyLag0008970
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]4.3e-1836.54Show/hide
Query:  CWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGF
        CW  P    YK+N D AV    + + IG +V N  GEVM   +  V F  D++ +EA+AVH GL  ++D+G    ++E+DS  VV  I++    R E+G+
Subjt:  CWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGF

Query:  LVEEIRSI-SSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVEGY
        L+ +++ + SS   S   K+  R+ N++AH +++ AL   ME  WLEEV   +  Y
Subjt:  LVEEIRSI-SSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVEGY

KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]6.2e-1735.62Show/hide
Query:  TETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRS
        T  E W PP +   KLN D ++ +E   S +G I+RN  G  ++ + +  E    VD LEA+AV+EGL     +  L + VE DSA+V + ++  G+D+S
Subjt:  TETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRS

Query:  EMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEG----TWLEEVSLVV
         +G ++E+I  +SS     SFKW  R  NKLAH +A   +    +      WLE+  L++
Subjt:  EMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEG----TWLEEVSLVV

XP_023876296.1 uncharacterized protein LOC111988743 [Quercus suber]3.6e-1735.85Show/hide
Query:  WSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGFL
        W  P  P YKLN D A+ KELN S IGAI+RN +GEVM  +      V D +  E +A  + +   +D GF ++++E D+A V+  +   G D S +G +
Subjt:  WSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGFL

Query:  VEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVEGYYSTEL
        V++++ +++  R  SF    R  N +AH +AR A  +  +  WLEE    V    S +L
Subjt:  VEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVEGYYSTEL

XP_023880084.1 uncharacterized protein LOC111992454 [Quercus suber]2.8e-1738.36Show/hide
Query:  WSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGFL
        W PP   +YKLN D  +  +L  S +GAI+RNERGEVM  L     FV D +  E +A  + L   +DVG L +++E D+A V+R + S   D S +G +
Subjt:  WSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGFL

Query:  VEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEE
        +E+I  + S  R  S     R+ N +AH +AR A  +  E  W+E+
Subjt:  VEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEE

XP_030963892.1 uncharacterized protein LOC115985062 [Quercus lobata]1.2e-1735.22Show/hide
Query:  MELLGGGETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQI
        +ELL   + ++  W PP   +YKLN D A+  +L  S +GAI+RNERGEVM  L     FV D +  E +A  + L   +DVG   +++E D+  V+R +
Subjt:  MELLGGGETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQI

Query:  DSAGSDRSEMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEE
         S   D S +G ++E+I  +    R  S     R+ N +AH ++R A  +  E  W+E+
Subjt:  DSAGSDRSEMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEE

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)3.6e-1534.21Show/hide
Query:  WSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGFL
        W PP+ P YKLNTD A+DKE  ++ +G I+RN +G VM  +     +  DV++ EA+A+ EGL    +V     L+E+DS  VV  I    S R E+ ++
Subjt:  WSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGFL

Query:  VEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVE
        + EIR +          +   + N +AH +A+ AL       W++EV + ++
Subjt:  VEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVE

A0A7J8WZ51 RNase H domain-containing protein1.3e-1533.94Show/hide
Query:  ETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDR
        E + + W PP+ P  KLN D     +LN S  G I+RNE+GEVM + + L   +LDV + EA+A ++GL    ++GF+ V VE D+  V+ +I      R
Subjt:  ETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDR

Query:  SEMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGT-WLEEVSLVVEGYYSTE
        +++  ++ +I++  S     SFK   R  N++AH +A+     R E T W+E++  V +   + E
Subjt:  SEMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGT-WLEEVSLVVEGYYSTE

A0A7J9L182 Uncharacterized protein1.3e-1533.94Show/hide
Query:  ETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDR
        E + + W PP+ P  KLN D     +LN S  G I+RNE+GEVM + + L   +LDV + EA+A ++GL    ++GF+ V VE D+  V+ +I      R
Subjt:  ETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDR

Query:  SEMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGT-WLEEVSLVVEGYYSTE
        +++  ++ +I++  S     SFK   R  N+++H +AR     R E T W+E++  V +   + E
Subjt:  SEMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGT-WLEEVSLVVEGYYSTE

A0A7N2LST3 RNase H domain-containing protein2.3e-1737.25Show/hide
Query:  GETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSD
        G  + + W PP   +YK+N D AV  E+N S  G +VRNER EVM +L      V D +  + +A  + L   VD GF+ V++E DS  V+R I +  ++
Subjt:  GETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSD

Query:  RSEMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEE
        RS +G + E+I+ +++  RS S  +  R+ N +AH +A  A  +  E  WLEE
Subjt:  RSEMGFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEE

V4UMR3 RNase H domain-containing protein (Fragment)2.1e-1836.54Show/hide
Query:  CWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGF
        CW  P    YK+N D AV    + + IG +V N  GEVM   +  V F  D++ +EA+AVH GL  ++D+G    ++E+DS  VV  I++    R E+G+
Subjt:  CWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGF

Query:  LVEEIRSI-SSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVEGY
        L+ +++ + SS   S   K+  R+ N++AH +++ AL   ME  WLEEV   +  Y
Subjt:  LVEEIRSI-SSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVEGY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein8.3e-0425.93Show/hide
Query:  WSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGFL
        W PP     K NTD   +++     IG ++RNE+GEV     R +  +  V   E  A+   + ++    +  V+ E+DS +V+ +I +       +   
Subjt:  WSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEMGFL

Query:  VEEIRSISSDPRSCSFKWYCRARNKLAHEVARSAL
        +++++ + S      F +  R  N LA  VAR +L
Subjt:  VEEIRSISSDPRSCSFKWYCRARNKLAHEVARSAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTATTGGGAGGGGGTGAAACAGAAACTGAGTGTTGGAGCCCACCTGAGTTCCCTAATTACAAGCTAAATACAGACATAGCAGTGGATAAAGAGCTCAATCTCAG
CAGTATTGGGGCAATAGTTAGAAATGAGAGAGGGGAAGTGATGCTTACCTTGATGAGGTTGGTTGAGTTTGTGCTTGACGTGGATGTATTGGAGGCGATGGCAGTGCACG
AAGGGCTGGCTGCAATTGTTGATGTCGGCTTCTTGCAGGTGTTGGTGGAAACGGATTCGGCGAGAGTGGTGCGTCAGATTGATTCTGCAGGGAGTGACCGCTCGGAGATG
GGGTTTCTGGTTGAGGAGATAAGGAGCATTTCTAGTGACCCGAGGTCTTGCTCGTTCAAGTGGTATTGTCGGGCAAGAAATAAGTTGGCGCATGAAGTTGCAAGATCAGC
GTTGAGGCTGCGGATGGAAGGTACTTGGCTGGAGGAGGTGTCGCTGGTGGTCGAAGGCTACTACTCTACTGAGCTAAGGACCTCTGTGTTGAACTCTAGGGCTTTCAATA
ATGAGCCACAGTTTTTGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTATTGGGAGGGGGTGAAACAGAAACTGAGTGTTGGAGCCCACCTGAGTTCCCTAATTACAAGCTAAATACAGACATAGCAGTGGATAAAGAGCTCAATCTCAG
CAGTATTGGGGCAATAGTTAGAAATGAGAGAGGGGAAGTGATGCTTACCTTGATGAGGTTGGTTGAGTTTGTGCTTGACGTGGATGTATTGGAGGCGATGGCAGTGCACG
AAGGGCTGGCTGCAATTGTTGATGTCGGCTTCTTGCAGGTGTTGGTGGAAACGGATTCGGCGAGAGTGGTGCGTCAGATTGATTCTGCAGGGAGTGACCGCTCGGAGATG
GGGTTTCTGGTTGAGGAGATAAGGAGCATTTCTAGTGACCCGAGGTCTTGCTCGTTCAAGTGGTATTGTCGGGCAAGAAATAAGTTGGCGCATGAAGTTGCAAGATCAGC
GTTGAGGCTGCGGATGGAAGGTACTTGGCTGGAGGAGGTGTCGCTGGTGGTCGAAGGCTACTACTCTACTGAGCTAAGGACCTCTGTGTTGAACTCTAGGGCTTTCAATA
ATGAGCCACAGTTTTTGTCTTGA
Protein sequenceShow/hide protein sequence
MELLGGGETETECWSPPEFPNYKLNTDIAVDKELNLSSIGAIVRNERGEVMLTLMRLVEFVLDVDVLEAMAVHEGLAAIVDVGFLQVLVETDSARVVRQIDSAGSDRSEM
GFLVEEIRSISSDPRSCSFKWYCRARNKLAHEVARSALRLRMEGTWLEEVSLVVEGYYSTELRTSVLNSRAFNNEPQFLS