; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008972 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008972
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr9:33186520..33191611
RNA-Seq ExpressionLag0008972
SyntenyLag0008972
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS31826.1 hypothetical protein Acr_00g0019390 [Actinidia rufa]2.7e-0533.64Show/hide
Query:  AKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGF
        +KA    A+E  G+   P W  ++     ++      + K KG    ++E LIN+ D PFT  VM+  +P KFK+PT +P+D  K+ + HL+ Y+  M  
Subjt:  AKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGF

Query:  HGVSDAI
          V D I
Subjt:  HGVSDAI

KAF7143504.1 hypothetical protein RHSIM_Rhsim05G0128200 [Rhododendron simsii]7.2e-0645.76Show/hide
Query:  LETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAI
        L TL+ ++DLPFT  VM   +P KFK+PTF+P+D   + + HL+ Y+ +M  H +SD I
Subjt:  LETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAI

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.7e-1028.93Show/hide
Query:  LIRDSRKRKEPMEYTIESKTRSKGKKTNNLTSKYQPHNRSRPTDLIK-EKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQ
        L+RD +K K P E   E  T S G K   L        R+R  D  K +K+  + A      + + +N  P    +         + + + HK KG +  
Subjt:  LIRDSRKRKEPMEYTIESKTRSKGKKTNNLTSKYQPHNRSRPTDLIK-EKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQ

Query:  NLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQVKFFSSSLG
         LE L++Q D PFT+E+M+ +VP KFK+PT K +D   + V HLD YR WM  +GVS+A+   V   +       ++GS     ++     +  F S   
Subjt:  NLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQVKFFSSSLG

Query:  VFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS
         F+  F      SRP+++  ++       L+  V+    E    V G+  A  L+A +  V D+      SFS  +R P+
Subjt:  VFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.3e-1032.98Show/hide
Query:  KSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQV
        K KG +   LE L+ Q D PFT+E+M+ +VP KFK+PT KP+D     V HLD YR WM  +GVSDAI   V   +       ++GS     ++     +
Subjt:  KSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQV

Query:  KFFSSSLGVFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS
          F S    F+  F      SRP+++  ++       L   V+    E    + G+  A  L+A +  V D+      SFS  +R PS
Subjt:  KFFSSSLGVFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS

XP_023928294.1 uncharacterized protein LOC112039644 [Quercus suber]2.1e-0540.91Show/hide
Query:  KGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAI
        KG    +L+ L+N++D PFT  V    +PQKF++P  + YD  K+L+ HL+ ++T M   GV+D I
Subjt:  KGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAI

TrEMBL top hitse value%identityAlignment
A0A2N9FDC4 Ribonuclease H8.3e-0826.52Show/hide
Query:  TIESKTRSKG--KKTNNLTSKYQPHNRSRPTDLIKEKRRMAKATEARAVEVEGKNGNPP-------WKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLI
        T + K R KG  K+  +  S+Y+ ++RS        K       + +  E +G+N   P       W+ E+     ++G  +    + KG   +NL+TL+
Subjt:  TIESKTRSKG--KKTNNLTSKYQPHNRSRPTDLIKEKRRMAKATEARAVEVEGKNGNPP-------WKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLI

Query:  NQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACDRRRVSGSCGS
        ++ D PFT++V+   +P KF++P+ + +D  K+ + HL+ ++T M   GV D     A   +++ P+    ++ + GS GS
Subjt:  NQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACDRRRVSGSCGS

A0A2N9GAX2 Reverse transcriptase domain-containing protein2.4e-0723.73Show/hide
Query:  TIESKTRSKG--KKTNNLTSKYQPHNRSRPTDLIKEKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPF
        T + K R KG  K+  +  S+++  +  +     + ++     T         +  +  W+ E+     ++G  +    + KG   +NL+TL+++ D PF
Subjt:  TIESKTRSKG--KKTNNLTSKYQPHNRSRPTDLIKEKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPF

Query:  TDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACDRRRVSGSCGSATK
        T++V+   +P KF++P+ + +D  K+ + HL+ ++T M   GV D     A   +++ P+    ++ + GS GS T+
Subjt:  TDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACDRRRVSGSCGSATK

A0A2N9GP70 Retrotrans_gag domain-containing protein2.4e-0727.37Show/hide
Query:  TIESKTRSKGKK------------TNNLTSKYQPHNRS------RPTDLIKEKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGL
        +++ K RSKG K            TNN  S    +N S      + TD  ++ R+  + T A   E   K     W+ E+     ++G  +    + KG 
Subjt:  TIESKTRSKGKK------------TNNLTSKYQPHNRS------RPTDLIKEKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGL

Query:  EEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACDRRRVSGSCGS
          +NL+TL+++ D PFT++V+   +P KF++P+ + +D  K+ + HL+ ++T M   GV D     A   +++ P+    ++ + GS GS
Subjt:  EEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACDRRRVSGSCGS

A0A6J1DWY0 uncharacterized protein LOC1110252938.0e-1128.93Show/hide
Query:  LIRDSRKRKEPMEYTIESKTRSKGKKTNNLTSKYQPHNRSRPTDLIK-EKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQ
        L+RD +K K P E   E  T S G K   L        R+R  D  K +K+  + A      + + +N  P    +         + + + HK KG +  
Subjt:  LIRDSRKRKEPMEYTIESKTRSKGKKTNNLTSKYQPHNRSRPTDLIK-EKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQ

Query:  NLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQVKFFSSSLG
         LE L++Q D PFT+E+M+ +VP KFK+PT K +D   + V HLD YR WM  +GVS+A+   V   +       ++GS     ++     +  F S   
Subjt:  NLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQVKFFSSSLG

Query:  VFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS
         F+  F      SRP+++  ++       L+  V+    E    V G+  A  L+A +  V D+      SFS  +R P+
Subjt:  VFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS

A0A6J1E1E7 uncharacterized protein LOC1110255486.1e-1132.98Show/hide
Query:  KSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQV
        K KG +   LE L+ Q D PFT+E+M+ +VP KFK+PT KP+D     V HLD YR WM  +GVSDAI   V   +       ++GS     ++     +
Subjt:  KSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQV

Query:  KFFSSSLGVFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS
          F S    F+  F      SRP+++  ++       L   V+    E    + G+  A  L+A +  V D+      SFS  +R PS
Subjt:  KFFSSSLGVFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAGAAACAAAGATCTAAACGCAGAACATTCGAACGGTGAGCACCACCCGCAGGGGTCACGAGAAGAAAGTCGAGGTCAGCCTCGGACCCAATCTCGTCGGCC
TTTATCCCGAGAGAGACAGACTGATGTCAAAATTGCTACCCTCGAGGATAAAGTAAGTGTGATGGATCATAATTTGTCTAGGATACTTCTTATCTTGAATGAATCTGGTC
CTAGCACTAAAATCCATGATGAGAGATTGATTAGGGATTCAAGGAAGAGGAAGGAACCAATGGAGTACACTATAGAGTCAAAAACAAGATCGAAGGGAAAGAAGACTAAC
AACTTGACCAGCAAGTATCAACCGCACAACAGGAGCAGACCTACAGACCTGATCAAGGAAAAACGCAGAATGGCCAAGGCTACCGAGGCTAGAGCAGTCGAGGTCGAGGG
CAAGAATGGTAACCCCCCTTGGAAGACTGAACTTCCGAACACACTGATGGAGATCGGGAATTTCCAATGGAACCTGCACAAATCAAAAGGTTTGGAGGAACAAAACTTGG
AAACCCTGATCAACCAGGTTGATCTGCCCTTCACTGATGAAGTTATGAAAGCCGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAGCCGTATGATAGCAAGAAGAAC
CTCGTACAACACTTAGACGTCTACAGGACATGGATGGGTTTTCACGGCGTTTCAGATGCAATCAGCGTCAGCGTCAGGCGTCCCAGTGAAGCTTGTGACCGGCGGCGAGT
CTCCGGTAGCTGTGGGTCGGCGACAAAGAAGGGTTTCGGCCAACAGGTGAAGTTTTTCTCCTCTTCTTTAGGCGTTTTTCTCGCAAATTTTCCCTCTCGCCCGATCTCCC
ACTCCCGGTCACTCTCTCATCTGTTTTTGCGTGTTCTTCAAGCAGCAGTATCGTTAGGCGCATCAGAACTGTTTGGGGGCGTTTTAGGCGTTGTTCCGGCGTTTCGTTTA
GTGGCAAACGTTCTTTTCGTATCCGATGATTTGAGTGTTGGATCTCCAAGTTTCAGCATCCTTGAGCGGGTTCCGTCCTTGGGTGGTAATTGGAACCCGGACTGCAAGCA
CGATTTTCTGTTTGGGGTCTTGGAGCTAGGAGGTTCTATAGTTAATCTCACAAGCTTTTTAGCTAAGTCGGGTCGTTACAGTTGGTATCAGAGCCCAGTTTCTAGGTTCT
GTAGACTCGCTTACATCGTAAGCATCAGATTTCCCCATAGCCAAGTACAAGTAAGCACGCCTCGCCATCGCCAGACTATGCCTCCACGTATTCGAGGTCGAGGATGGGGT
CGTGGACGTGGTAGGGGTCATGTGTCCCTAGAGCAAGTAGATCCTCCAGTAATTCATCAAGTTGTTAATGAGCCCGAGATTCAGATGCCTGCATCGCTTGCACCCCGACG
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAGAAACAAAGATCTAAACGCAGAACATTCGAACGGTGAGCACCACCCGCAGGGGTCACGAGAAGAAAGTCGAGGTCAGCCTCGGACCCAATCTCGTCGGCC
TTTATCCCGAGAGAGACAGACTGATGTCAAAATTGCTACCCTCGAGGATAAAGTAAGTGTGATGGATCATAATTTGTCTAGGATACTTCTTATCTTGAATGAATCTGGTC
CTAGCACTAAAATCCATGATGAGAGATTGATTAGGGATTCAAGGAAGAGGAAGGAACCAATGGAGTACACTATAGAGTCAAAAACAAGATCGAAGGGAAAGAAGACTAAC
AACTTGACCAGCAAGTATCAACCGCACAACAGGAGCAGACCTACAGACCTGATCAAGGAAAAACGCAGAATGGCCAAGGCTACCGAGGCTAGAGCAGTCGAGGTCGAGGG
CAAGAATGGTAACCCCCCTTGGAAGACTGAACTTCCGAACACACTGATGGAGATCGGGAATTTCCAATGGAACCTGCACAAATCAAAAGGTTTGGAGGAACAAAACTTGG
AAACCCTGATCAACCAGGTTGATCTGCCCTTCACTGATGAAGTTATGAAAGCCGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAGCCGTATGATAGCAAGAAGAAC
CTCGTACAACACTTAGACGTCTACAGGACATGGATGGGTTTTCACGGCGTTTCAGATGCAATCAGCGTCAGCGTCAGGCGTCCCAGTGAAGCTTGTGACCGGCGGCGAGT
CTCCGGTAGCTGTGGGTCGGCGACAAAGAAGGGTTTCGGCCAACAGGTGAAGTTTTTCTCCTCTTCTTTAGGCGTTTTTCTCGCAAATTTTCCCTCTCGCCCGATCTCCC
ACTCCCGGTCACTCTCTCATCTGTTTTTGCGTGTTCTTCAAGCAGCAGTATCGTTAGGCGCATCAGAACTGTTTGGGGGCGTTTTAGGCGTTGTTCCGGCGTTTCGTTTA
GTGGCAAACGTTCTTTTCGTATCCGATGATTTGAGTGTTGGATCTCCAAGTTTCAGCATCCTTGAGCGGGTTCCGTCCTTGGGTGGTAATTGGAACCCGGACTGCAAGCA
CGATTTTCTGTTTGGGGTCTTGGAGCTAGGAGGTTCTATAGTTAATCTCACAAGCTTTTTAGCTAAGTCGGGTCGTTACAGTTGGTATCAGAGCCCAGTTTCTAGGTTCT
GTAGACTCGCTTACATCGTAAGCATCAGATTTCCCCATAGCCAAGTACAAGTAAGCACGCCTCGCCATCGCCAGACTATGCCTCCACGTATTCGAGGTCGAGGATGGGGT
CGTGGACGTGGTAGGGGTCATGTGTCCCTAGAGCAAGTAGATCCTCCAGTAATTCATCAAGTTGTTAATGAGCCCGAGATTCAGATGCCTGCATCGCTTGCACCCCGACG
TTAG
Protein sequenceShow/hide protein sequence
MEKRNKDLNAEHSNGEHHPQGSREESRGQPRTQSRRPLSRERQTDVKIATLEDKVSVMDHNLSRILLILNESGPSTKIHDERLIRDSRKRKEPMEYTIESKTRSKGKKTN
NLTSKYQPHNRSRPTDLIKEKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKN
LVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQVKFFSSSLGVFLANFPSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRL
VANVLFVSDDLSVGSPSFSILERVPSLGGNWNPDCKHDFLFGVLELGGSIVNLTSFLAKSGRYSWYQSPVSRFCRLAYIVSIRFPHSQVQVSTPRHRQTMPPRIRGRGWG
RGRGRGHVSLEQVDPPVIHQVVNEPEIQMPASLAPRR