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Lag0008974 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008974
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr9:33201587..33202030
RNA-Seq ExpressionLag0008974
SyntenyLag0008974
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3467359.1 reverse transcriptase [Gossypium australe]1.6e-1231.5Show/hide
Query:  KNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDIL
        +N +K  W L I  + KI VWK+ N+++P  +NLVK+ + V ++   CR + E S+H++W C   K +W     +L     +  E W +           
Subjt:  KNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDIL

Query:  SEEERMMVAVIIWSLWSYRNRVMINGI
         E++R  +A+ +WSLW  RN+++  GI
Subjt:  SEEERMMVAVIIWSLWSYRNRVMINGI

KAF8408042.1 hypothetical protein HHK36_007182 [Tetracentron sinense]2.3e-1132.58Show/hide
Query:  DGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWER
        +GS+S   W + W L I P+ KI +WK+  +I+P + NL K++I V  +   C  + E   HV+  C++++ +WL  L  L  L S      S   W E 
Subjt:  DGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWER

Query:  MMDILSEEERMMVAVIIWSLWSYRNRVMINGI
        +M    EE      +I WS+W +RN  + +G+
Subjt:  MMDILSEEERMMVAVIIWSLWSYRNRVMINGI

XP_018852561.1 uncharacterized protein LOC109014517 [Juglans regia]3.2e-1331.3Show/hide
Query:  SDGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWE
        S+  I+K +WK  WNL +  + K  +WK L  I+P+K N+ K+ +  +     C+ ++E   HV+W C  + N+W+      + L   C E    I  W+
Subjt:  SDGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWE

Query:  RMMDILSEEERMMVAVIIWSLWSYRNRVMIN
        ++M  L +E+  +VAVI+  +W  RN+ + N
Subjt:  RMMDILSEEERMMVAVIIWSLWSYRNRVMIN

XP_031099854.1 uncharacterized protein LOC116004057 [Ipomoea triloba]2.3e-1130Show/hide
Query:  WKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDILSEE
        W   W +K  P+ K  +W+ + D++P+ TNL+ KR+DV      C    E + H + LC+FSK +W       +   S    G +  DW+  +M +L++E
Subjt:  WKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDILSEE

Query:  ERMMVAVIIWSLWSYRNRVM
        + ++V   ++ +W+ RNR +
Subjt:  ERMMVAVIIWSLWSYRNRVM

XP_031125428.1 uncharacterized protein LOC116027784 [Ipomoea triloba]4.6e-1232.26Show/hide
Query:  WKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIW----LNFLPNLACLFSMCREGWSAIDWWERMMDI
        W K WNLKI PR K  +W+ + + +P+  NL+++R+D+N     C  + E  +HV   C F+ N+W    ++        FSM         W+E++++ 
Subjt:  WKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIW----LNFLPNLACLFSMCREGWSAIDWWERMMDI

Query:  LSEEERMMVAVIIWSLWSYRNRVM
        L  EE + VA I++++WS RN  +
Subjt:  LSEEERMMVAVIIWSLWSYRNRVM

TrEMBL top hitse value%identityAlignment
A0A2I4EJR0 uncharacterized protein LOC1089902011.4e-1129.71Show/hide
Query:  DGSISKNL---WKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDW
        D S+   L   WK+ W+L+I    K  +WK   D++P++ N+ KK++  N L +  +  +E  THV+W C  + +IW +   N + +          ++ 
Subjt:  DGSISKNL---WKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDW

Query:  WERMMDILSEEERMMVAVIIWSLWSYRNRVMINGITAD
        W+R  + L+E E+  VAV +W +W  R   M  G   D
Subjt:  WERMMDILSEEERMMVAVIIWSLWSYRNRVMINGITAD

A0A2I4H8T8 uncharacterized protein LOC1090145171.5e-1331.3Show/hide
Query:  SDGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWE
        S+  I+K +WK  WNL +  + K  +WK L  I+P+K N+ K+ +  +     C+ ++E   HV+W C  + N+W+      + L   C E    I  W+
Subjt:  SDGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWE

Query:  RMMDILSEEERMMVAVIIWSLWSYRNRVMIN
        ++M  L +E+  +VAVI+  +W  RN+ + N
Subjt:  RMMDILSEEERMMVAVIIWSLWSYRNRVMIN

A0A5B6VDZ6 Reverse transcriptase7.7e-1331.5Show/hide
Query:  KNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDIL
        +N +K  W L I  + KI VWK+ N+++P  +NLVK+ + V ++   CR + E S+H++W C   K +W     +L     +  E W +           
Subjt:  KNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDIL

Query:  SEEERMMVAVIIWSLWSYRNRVMINGI
         E++R  +A+ +WSLW  RN+++  GI
Subjt:  SEEERMMVAVIIWSLWSYRNRVMINGI

A0A5E4GGB8 PREDICTED: reverse mRNAase (Fragment)1.1e-1128.26Show/hide
Query:  ESFSDGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCRE--GWSA
        ES S  S +  LW+  WN  +  + KI  W++ +DI+P+K NL+KK +D+  + + C    E + HV+ +C F+   W     N++ L     +    + 
Subjt:  ESFSDGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCRE--GWSA

Query:  IDWWERMMDILSEEERMMVAVIIWSLWSYRNRVMINGI
         DW   M++  S+ +R  +  ++W++W  RN ++  G+
Subjt:  IDWWERMMDILSEEERMMVAVIIWSLWSYRNRVMINGI

A0A803NL91 Uncharacterized protein1.9e-1129.75Show/hide
Query:  SKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDI
        S   W+K WNLK+ P+ K  +W++    +P+K++L  K + VN L   C +++E  +HV+  C++SK+ W      +  L S      +   W + +   
Subjt:  SKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDI

Query:  LSEEERMMVAVIIWSLWSYRN
          + ERM+++++ W+LW  RN
Subjt:  LSEEERMMVAVIIWSLWSYRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein5.3e-0623.13Show/hide
Query:  SKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDI
        S +L  + WNL I+P+ K  +W+ L+  + +   L  + + ++     C  + E   H ++ C F+   W           S+ R    + D+ E + +I
Subjt:  SKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWERMMDI

Query:  L--------SEEERMMVAVIIWSLWSYRNRVMIN
        L        S+  +++   +IW +W  RN V+ N
Subjt:  L--------SEEERMMVAVIIWSLWSYRNRVMIN

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.0e-0533.9Show/hide
Query:  WNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSK
        W+LKI P+ K+ +WK LN+ +P    L+ + I +      CR   E  TH+++ C F++
Subjt:  WNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATGAGTTGAAGGAGTCTTTCTCGGATGGATCTATTTCCAAGAATTTGTGGAAGAAGTCGTGGAACCTTAAGATTATTCCTAGAGCAAAGATCTGTGTGTGGAA
AATGCTTAATGACATTATCCCCTCTAAGACAAATCTGGTCAAAAAAAGGATTGATGTTAATACCCTTTATGTTCCGTGCAGGAGCAAGAAAGAATATTCTACCCATGTTG
TGTGGCTATGTAATTTTTCGAAGAATATTTGGTTGAATTTTCTCCCTAATTTAGCTTGTTTGTTCTCTATGTGCAGGGAGGGATGGAGTGCGATCGATTGGTGGGAGCGA
ATGATGGACATCCTCTCCGAGGAAGAAAGAATGATGGTTGCGGTTATAATTTGGAGCCTATGGTCTTATCGTAACAGAGTTATGATCAACGGTATCACAGCTGATCAAGG
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATGAGTTGAAGGAGTCTTTCTCGGATGGATCTATTTCCAAGAATTTGTGGAAGAAGTCGTGGAACCTTAAGATTATTCCTAGAGCAAAGATCTGTGTGTGGAA
AATGCTTAATGACATTATCCCCTCTAAGACAAATCTGGTCAAAAAAAGGATTGATGTTAATACCCTTTATGTTCCGTGCAGGAGCAAGAAAGAATATTCTACCCATGTTG
TGTGGCTATGTAATTTTTCGAAGAATATTTGGTTGAATTTTCTCCCTAATTTAGCTTGTTTGTTCTCTATGTGCAGGGAGGGATGGAGTGCGATCGATTGGTGGGAGCGA
ATGATGGACATCCTCTCCGAGGAAGAAAGAATGATGGTTGCGGTTATAATTTGGAGCCTATGGTCTTATCGTAACAGAGTTATGATCAACGGTATCACAGCTGATCAAGG
CTAG
Protein sequenceShow/hide protein sequence
MRDELKESFSDGSISKNLWKKSWNLKIIPRAKICVWKMLNDIIPSKTNLVKKRIDVNTLYVPCRSKKEYSTHVVWLCNFSKNIWLNFLPNLACLFSMCREGWSAIDWWER
MMDILSEEERMMVAVIIWSLWSYRNRVMINGITADQG