; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008989 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008989
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:33528494..33530772
RNA-Seq ExpressionLag0008989
SyntenyLag0008989
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039098.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-4150.72Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-
        M ELTNT+Q+KGELV++YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD ++P  R +    ++T 
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-

Query:  ------IEESMVVNTTVHKSSSKGK-----RQTNG--THHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P
              I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFPD D+PDMLEQLLE QLI+LP+CKRPE+  KVDDPN+         P
Subjt:  ------IEESMVVNTTVHKSSSKGK-----RQTNG--THHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P

Query:  KAKCLHIEE
          KC  ++E
Subjt:  KAKCLHIEE

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.3e-4250.72Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-
        M ELTNT+Q+KGELV+NYINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD ++P  R +    ++T 
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-

Query:  ------IEESMVVNTTVHKSSSKGKRQTNGTHH-------LTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P
              I+ESMVV+ T  KS SK K       H        TLKERQ+K+YPFPD D+ DMLEQLLE QLI+LP+CKRPE+ EKVDDPN+         P
Subjt:  ------IEESMVVNTTVHKSSSKGKRQTNGTHH-------LTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P

Query:  KAKCLHIEE
          KC  ++E
Subjt:  KAKCLHIEE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.4e-4145.93Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNN----
        M ELTNTKQRKGE V++YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD ++P+++K+ +      
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNN----

Query:  ---EETIEESMVVNTTVHKSSSKGK-----RQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P
           + T +ESMVVNTT  K  SKGK     ++ +G+    LTLKERQ+K+YPFPD DI DMLEQLLE QLI+LP+CKRPE+  KVDDPN+         P
Subjt:  ---EETIEESMVVNTTVHKSSSKGK-----RQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P

Query:  KAKCLHIEEKSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDK
          KC  ++E     +   R+++  ++   + ++ EV +  E +S +
Subjt:  KAKCLHIEEKSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDK

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.1e-4145.93Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNN----
        M ELTNTKQRKGE V++YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD ++P+++K+ +      
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNN----

Query:  ---EETIEESMVVNTTVHKSSSKGK-----RQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P
           + T++ESMVVNTT  K  SKGK     ++ +G+    LTLKERQ+K+YPFPD DI DMLEQLLE QLI+LP+CKRPE+  KVDDPN+         P
Subjt:  ---EETIEESMVVNTTVHKSSSKGK-----RQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P

Query:  KAKCLHIEEKSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDK
          KC  ++E     +   R+++  ++   + ++ EV +  E +S +
Subjt:  KAKCLHIEEKSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDK

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]2.4e-4145.93Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNN----
        M ELTNTKQRKGE V++YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD ++P+++K+ +      
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNN----

Query:  ---EETIEESMVVNTTVHKSSSKGK-----RQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P
           + T +ESMVVNTT  K  SKGK     ++ +G+    LTLKERQ+K+YPFPD DI DMLEQLLE QLI+LP+CKRPE+  KVDDPN+         P
Subjt:  ---EETIEESMVVNTTVHKSSSKGK-----RQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P

Query:  KAKCLHIEEKSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDK
          KC  ++E     +   R+++  ++   + ++ EV +  E +S +
Subjt:  KAKCLHIEEKSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDK

TrEMBL top hitse value%identityAlignment
A0A5A7STA5 Ty3-gypsy retrotransposon protein3.4e-4153.4Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNN----
        M ELTNTKQRKGE V++YINRWRA+SLDCKDRLTELSSVEMC QGMHW LLYIL                           K+  +P++RK+ +      
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNN----

Query:  ---EETIEESMVVNTTVHKSS----SKGKRQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNFPK
           + +++ESMVVNTT  K S     + +++ +G+    LTLKERQKK+YPFP  DI DMLEQLLE QLI+LP+CKRPE+  KVDDPN+ K
Subjt:  ---EETIEESMVVNTTVHKSS----SKGKRQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNFPK

A0A5A7STD3 Ty3-gypsy retrotransposon protein2.0e-4151.21Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMR--KEGRNNEE
        M ELTNTKQRKGE V++YINRW+A+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD  +P++R  KE ++ E+
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMR--KEGRNNEE

Query:  TI----EESMVVNTTVHKSS----SKGKRQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------PKA
         +    +ESMVVNT+  K S     + +++ +G+    LTLKERQ+K+YPFPD DI DMLEQLLE QLI+LPKCKRPE+  KVDDPN+         P  
Subjt:  TI----EESMVVNTTVHKSS----SKGKRQTNGT--HHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------PKA

Query:  KCLHIEE
        KC  ++E
Subjt:  KCLHIEE

A0A5A7T892 Ty3-gypsy retrotransposon protein1.2e-4150.72Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-
        M ELTNT+Q+KGELV++YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD ++P  R +    ++T 
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-

Query:  ------IEESMVVNTTVHKSSSKGK-----RQTNG--THHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P
              I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFPD D+PDMLEQLLE QLI+LP+CKRPE+  KVDDPN+         P
Subjt:  ------IEESMVVNTTVHKSSSKGK-----RQTNG--THHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P

Query:  KAKCLHIEE
          KC  ++E
Subjt:  KAKCLHIEE

A0A5A7URH1 Ty3-gypsy retrotransposon protein3.4e-4133.65Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-
        M ELTNT+Q+KGELV++YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD ++P  R +    ++T 
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-

Query:  ------IEESMVVNTTVHKSSSKGK-----RQTNG--THHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P
              I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFPD D+ DMLEQLLE QLI+LP+CKRPE+  KVDDPN+         P
Subjt:  ------IEESMVVNTTVHKSSSKGK-----RQTNG--THHLTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P

Query:  KAKCLHIEE-------------------------------------------------------------------------------------------
          KC  ++E                                                                                           
Subjt:  KAKCLHIEE-------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------KSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSS
                                                                    PSTS FDRLK+T+DQ +R+M + + K F E N D K+ S 
Subjt:  ----------------------------------------------------------KSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSS

Query:  IPSRMKRKFSVLINTEGSL
        +PSRMKRK  V INTEGSL
Subjt:  IPSRMKRKFSVLINTEGSL

A0A5A7UXF0 Ty3-gypsy retrotransposon protein4.0e-4250.72Show/hide
Query:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-
        M ELTNT+Q+KGELV+NYINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL                           KD ++P  R +    ++T 
Subjt:  MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYIL---------------------------KDLILPDMRKEGRNNEET-

Query:  ------IEESMVVNTTVHKSSSKGKRQTNGTHH-------LTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P
              I+ESMVV+ T  KS SK K       H        TLKERQ+K+YPFPD D+ DMLEQLLE QLI+LP+CKRPE+ EKVDDPN+         P
Subjt:  ------IEESMVVNTTVHKSSSKGKRQTNGTHH-------LTLKERQKKIYPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNF---------P

Query:  KAKCLHIEE
          KC  ++E
Subjt:  KAKCLHIEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTC
TTCCGTAGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGACCTGATACTCCCTGACATGAGGAAAGAAGGAAGGAACAACGAAGAGACTATAG
AAGAATCTATGGTTGTAAACACAACCGTTCATAAGTCGTCTTCGAAAGGAAAGCGACAAACGAATGGAACGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTAT
CCTTTCCCTGATGACGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCC
CAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACT
TGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTG
AAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCAAGGTTCTTCGTTGTATCCTCTGCGTTGTTCCTTCTCCAAGT
TCGAGGGTTCTCAGTTGTACGACTGCACGTTGTTCCTCCTCCAAGTGAGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCA
CGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCATGCTCTGCGATGCAGTTCTTT
CTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAGGTTCTCCGCTG
CTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCTCCAAGTTC
GAAGGTTTTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTGAAGGTTCTCACGCGCTTCGTTGCA
TTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGAAAGGCGTGG
GGCAACACAAGTCCAAGGACACGTCCCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTC
TTCCGTAGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGACCTGATACTCCCTGACATGAGGAAAGAAGGAAGGAACAACGAAGAGACTATAG
AAGAATCTATGGTTGTAAACACAACCGTTCATAAGTCGTCTTCGAAAGGAAAGCGACAAACGAATGGAACGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTAT
CCTTTCCCTGATGACGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCC
CAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACT
TGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTG
AAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCAAGGTTCTTCGTTGTATCCTCTGCGTTGTTCCTTCTCCAAGT
TCGAGGGTTCTCAGTTGTACGACTGCACGTTGTTCCTCCTCCAAGTGAGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCA
CGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCATGCTCTGCGATGCAGTTCTTT
CTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAGGTTCTCCGCTG
CTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCTCCAAGTTC
GAAGGTTTTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTGAAGGTTCTCACGCGCTTCGTTGCA
TTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGAAAGGCGTGG
GGCAACACAAGTCCAAGGACACGTCCCAAAGTAA
Protein sequenceShow/hide protein sequence
MFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKDLILPDMRKEGRNNEETIEESMVVNTTVHKSSSKGKRQTNGTHHLTLKERQKKIY
PFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKVDDPNFPKAKCLHIEEKSPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSL
KFLLSKFEGPYTVRYCVVPSPSSRFFVVSSALFLLQVRGFSVVRLHVVPPPSEKDLMWCAVALFPLLSSSMVLTQLRWSSFSPSSKVLTRFVAVPSLQGRRFSCSAMQFF
LPKFEGSRTSLQFLLPNSKVLTRFAAVPSSKFKVLRCCSSFFQVRRFSRRFAAVPSSKFEGSHVLRCSSFLQVRRFSRASLQFLPPSSKVLTRFVAVPSSKLKVLTRFVA
FLPPSSKVLMLRSAALLRYFLKSKDVNCPCTYAERRGATQVQGHVPK