CuGenDBv2

Gene ID	Lag0008990
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr9:33554165..33554755
RNA-Seq Expression	Lag0008990
Synteny	Lag0008990
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process) GO:0016787 - hydrolase activity (molecular function) GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_027122102.1 uncharacterized protein LOC113739055 [Coffea arabica]

2.1e-52

51.81

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Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        V+YK++SK+L NR+K +L   IS  QS FI GR ++DNVI+ +E L  LK+KR G+ G+ + KLDMSKAYDRVEW FL RIM++MGF P +V  ++ CIS
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR
        +V +SFN+NG + G+V PSRG+R+GDPLSPYLF++C EGLS ++++  ++  + G+++ R  P VS LFFAYD+LL+ +A    A+   ++LR
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR

XP_027169606.1 uncharacterized protein LOC113769349 [Coffea eugenioides]

1.1e-50

51.81

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Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        V+YK +SK+L NR+K +L++ IS  QS FI  R ++DNVIL +E +  LK KR G+ G+ + KLDM+KAYDRVEW FL+ +M KMGF  +W+  +  C+ 
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR
        +V +SFN NG   G VVP RG+R+GDPLSPYLFL+C+EG S +L++ EE N IKGLR++R GP ++ LFFA D+L+F +A    A+    IL+
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR

XP_031095051.1 uncharacterized protein LOC115999336 [Ipomoea triloba]

1.4e-51

54.59

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Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        V+YK+++KVL N++K +L+ LIS+ QS FI  R + DN++   E    L  K+ G  GW + KLDM+KAYDR+EW FL  +ML MGFA EWV+LV++C++
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVA
        +V ++F VNGV  G VVPSRGLR+GDPLSPYLF++CAEGLS +L++ +E  +I G RVAR  P +S LFFA D+LLFF+A    A
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVA

XP_031127667.1 uncharacterized protein LOC116029767 [Ipomoea triloba]

6.1e-52

52.85

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Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        VVYK+++KV+ NR+K +LN ++S  QS F+ GR + DN+IL  E    L+TKR G  GWA+ KLDM+KAYDR+EW +LE ++L +GFA +WVEL+ +C++
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR
        SV ++  VNG   G VVPSRG+R+GDPLSPYLF++CAEGLS + ++ E    I G+RVAR  P +S LFFA D+LLFF+A    A+   + LR
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR

XP_039834390.1 uncharacterized protein LOC120695147 [Panicum virgatum]

1.6e-52

53.89

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Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        VVYKL+SKVL NR+K +L ++IS  QS F+ GR + DNV+L YE    L  +R G+ G A+ KLDMSKAYDRVEWCFLE++MLK+GFA +WVE V+ C+S
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR
        +V +   VNG     + P RGLR+G+PLSPYLF+LCAEGLS +L++ EE   I+G+RV R  P ++ LFFA D+L+  RA    A+    IL+
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR

TrEMBL top hits

e value

%identity

Alignment

A0A2N9F345 Uncharacterized protein

2.9e-52

53.65

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Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        V+YK+ SKVLVNRMK ML Q+IS+ QS F+ GR + DNVI+ +E +  LK  R G     + KLDMSKAYDRVEW +L+ IMLK+GF P WV+L++ C++
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDIL
        +  ++  VNG   G V P RGLR+GDPLSPYLFLLCAEGLS +LR+ E  + IKG+ + R G  +S LFFA D+++F RA  +  R  H++L
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDIL

A0A2N9H567 Reverse transcriptase domain-containing protein

5.0e-52

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Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        V+YK++SKVL NR+K +LN +IS+ QS F+ GR + DN+++ +E L  LKTKR G+T   + KLDMSKAYDRVEW F+  +MLKMGF  +WV L++ CI 
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRA
        SV +S  +NG   G + PSRG+R+GDPLSPYLFL+CAEGL+ +L+  E S  ++GL + R GP ++ LFFA D+LLF+RA
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRA

A0A2N9I4W7 Reverse transcriptase domain-containing protein

2.9e-52

52.85

Show/hide

Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        V+YKLVSKVLVNR+K +L+++IS  QS F+ GR + DNV+L +E L  +K KR G     + KLDMSKAYDRVEW +L+ +MLKMGF   WV+L++ CIS
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR
         V +S  +NG   G+++PSRGLR+GDPLSPYLFL+CAEG + ++R+ E    I+G+ ++R GP  S LFFA D+++F RAK    R   +IL+
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR

A0A2N9I509 Uncharacterized protein

1.0e-52

56.77

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Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        VVYK+VSKVLVNRMK ML Q+IS  QS F+ GR + DNVI+ +E L  LK  R G     + KLDMSKAYDRVEW +L  I+LK+GFA  WV LV+ C++
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDIL
        S  +S  VNG   G V+PSRGLR+GDPLSPYLFL+CAEGLS ++R+ E  + IKG+ + R GP +S LFFA D+++F RA  S   V  +IL
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDIL

A0A6P6X866 uncharacterized protein LOC113739055

1.0e-52

51.81

Show/hide

Query:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        V+YK++SK+L NR+K +L   IS  QS FI GR ++DNVI+ +E L  LK+KR G+ G+ + KLDMSKAYDRVEW FL RIM++MGF P +V  ++ CIS
Subjt:  VVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR
        +V +SFN+NG + G+V PSRG+R+GDPLSPYLF++C EGLS ++++  ++  + G+++ R  P VS LFFAYD+LL+ +A    A+   ++LR
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR

SwissProt top hits

e value

%identity

Alignment

P14381 Transposon TX1 uncharacterized 149 kDa protein

4.1e-11

32.19

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Query:  YKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTG--WASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS
        YK+V+K +  R+K +L ++I   QS  + GR + DNV L  + L   +     RTG   A   LD  KA+DRV+  +L   +    F P++V  +    +
Subjt:  YKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTG--WASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICIS

Query:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLRE
        S      +N      +   RG+R+G PLS  L+ L  E   C+LR+
Subjt:  SVRFSFNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLRE

P92555 Uncharacterized mitochondrial protein AtMg01250

2.0e-13

51.47

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Query:  FNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYD
        F +NG   G V PSRGLR+GDPLSPYLF+LC E LS + R  +E   + G+RV+   P ++ L FA D
Subjt:  FNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYD

Arabidopsis top hits

e value

%identity

Alignment

AT4G20520.1 RNA binding;RNA-directed DNA polymerases

3.8e-12

37.35

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Query:  LVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWV
        +V R+K ++  LI   Q+ FI GR   DN++   E + +++ K+G + GW   KLD+ KAYDR+ W +LE  ++  GF   W+
Subjt:  LVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWV

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)

1.4e-14

51.47

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Query:  FNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYD
        F +NG   G V PSRGLR+GDPLSPYLF+LC E LS + R  +E   + G+RV+   P ++ L FA D
Subjt:  FNVNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYD

Sequences

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CDS sequence

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ATGCAATGTGTGGTCTATAAGCTTGTGTCAAAGGTACTGGTGAATCGAATGAAAGGTATGCTCAATCAACTGATATCCCAAAAACAGAGTGTGTTTATCTATGGGCGCTG
TGTGGTTGATAATGTTATCCTGGGGTATGAATGCCTTCCTGCACTAAAAACAAAGCGGGGTGGACGGACGGGTTGGGCCTCGCACAAGTTGGATATGAGTAAAGCCTATG
ACAGAGTGGAGTGGTGCTTTCTGGAGAGGATTATGTTGAAAATGGGTTTTGCTCCGGAGTGGGTGGAGTTAGTTATTATTTGTATTTCATCGGTTCGATTCTCCTTTAAT
GTGAATGGAGTTAGATGTGGGAATGTGGTTCCAAGCAGAGGGCTGAGACGGGGGGATCCGTTGTCTCCATACTTATTCCTACTATGTGCTGAGGGACTTTCCTGTATGCT
TCGGGAGGTGGAGGAGTCGAATGCCATAAAGGGACTGAGGGTAGCTCGATATGGTCCAGGAGTCTCACAATTATTTTTCGCTTACGACAACTTACTGTTTTTCCGAGCTA
AGGATAGTGTGGCTCGTGTTGAACACGACATTCTTCGCTAG

mRNA sequence

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Protein sequence

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MQCVVYKLVSKVLVNRMKGMLNQLISQKQSVFIYGRCVVDNVILGYECLPALKTKRGGRTGWASHKLDMSKAYDRVEWCFLERIMLKMGFAPEWVELVIICISSVRFSFN
VNGVRCGNVVPSRGLRRGDPLSPYLFLLCAEGLSCMLREVEESNAIKGLRVARYGPGVSQLFFAYDNLLFFRAKDSVARVEHDILR

Lag0008990 (gene) of Sponge gourd (AG-4) v1 genome