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Lag0008991 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008991
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr9:33567254..33569157
RNA-Seq ExpressionLag0008991
SyntenyLag0008991
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5449841.1 hypothetical protein F2P56_030246 [Juglans regia]3.4e-2151.55Show/hide
Query:  QWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGMEIVWER
        +WRF G+YGHP A  +  TW LM+ L  S+  PWLVGGDFN +L+ HEK GGR  P  +L  F   M  C L DLGF+G  FT CN R G++ + ER
Subjt:  QWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGMEIVWER

KAG0550343.1 hypothetical protein BDA96_01G330000 [Sorghum bicolor]1.4e-2237.06Show/hide
Query:  VQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTC-CNRRPGM
        V+ D+G + WRF GIYG PQ E + +TW L++ L      PWL  GDFN IL+QHEK+GG L+P+ ++ RF EAMV C+L DLGF G+ +T   N R   
Subjt:  VQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTC-CNRRPGM

Query:  EIVWER-------------------FKDTWLHTQDFEQAVAGNWKADYPSGSPSALATVASRCMSGLSRW
          V ER                       WL  +  E+ V   W+     G  + +  +  R    LS W
Subjt:  EIVWER-------------------FKDTWLHTQDFEQAVAGNWKADYPSGSPSALATVASRCMSGLSRW

XP_042972796.1 uncharacterized protein LOC122304603 [Carya illinoinensis]2.0e-2142.4Show/hide
Query:  EGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGMEIVWE
        +G  +W+F G+YGH + E +  TW+L++ LR     PWLV GDFN +L Q EK GGR +PE+ +  F   +  C+L+DLGF+G+ +T CNRR    +V E
Subjt:  EGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGMEIVWE

Query:  RFKDTWLHTQDFEQAVAGNWKADYP
        R  D ++ T         NWKA +P
Subjt:  RFKDTWLHTQDFEQAVAGNWKADYP

XP_042972966.1 uncharacterized protein LOC122304767 [Carya illinoinensis]7.4e-2435.47Show/hide
Query:  DEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLG----FRGEPFTCCNRRPGM
        +E  RQW F G+YGHP+ EL+  TW+++K L+G    PWLV GDFN +L   EK GG+ +PE ++  F + +  C L+D G     RG+ F         
Subjt:  DEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLG----FRGEPFTCCNRRPGM

Query:  EIVWERFKDTWLHTQDFEQAVAGNWKADYPSGSPSALATVASRCMSGLSRWGKPRTGNFASRIRAAIAWFQQ
             RFK  W   +D E+ VA +WK+       +   T    C   L+RW K + G    +I+ A    QQ
Subjt:  EIVWERFKDTWLHTQDFEQAVAGNWKADYPSGSPSALATVASRCMSGLSRWGKPRTGNFASRIRAAIAWFQQ

XP_042988712.1 uncharacterized protein LOC122316247 [Carya illinoinensis]7.4e-2429.46Show/hide
Query:  IPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRR
        I  ++   E   QW+F G+YGHP  EL+  TW  ++ LRG+   PWLV GDFN +L   EK GGR +PE ++  F + +  C  +DLGF G PFT CN+R
Subjt:  IPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRR

Query:  -----------------------PGMEIVWE--------------------------RFKDTWLHTQDFEQAVAGNWKADYPSGSPSALATVASRCMSGL
                               PG  +V                            RF+  W    ++E  V  +W         + + T    C   L
Subjt:  -----------------------PGMEIVWE--------------------------RFKDTWLHTQDFEQAVAGNWKADYPSGSPSALATVASRCMSGL

Query:  SRWGKPRTGNFASRIRAAIAWFQQ
        ++W K + GN   RI+      QQ
Subjt:  SRWGKPRTGNFASRIRAAIAWFQQ

TrEMBL top hitse value%identityAlignment
A0A2I0AN33 Ribonuclease H protein1.7e-1835.81Show/hide
Query:  IPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRR
        I  +++ D     WRF G YG P    K  +W  +  L      PWL  GDFN ILFQ+EK+GG  + E +++ F EA+  C L D+G+ G PFT  N R
Subjt:  IPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRR

Query:  PGMEIVWERFKDTWLHTQDFEQAVAG-NWKADYPSGSPSALATVASRC
         G E + ER           ++AV+   W+A +P      L T +  C
Subjt:  PGMEIVWERFKDTWLHTQDFEQAVAG-NWKADYPSGSPSALATVASRC

A0A2N9EU07 Uncharacterized protein1.7e-1835.84Show/hide
Query:  WRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGMEIVWE-----
        WR  G YGHP+  L+  +WAL++HL G    PWLV GDFN I   +E+ G   +   ++A F EA+  C L DLGF+G  FT  NRR   E+V       
Subjt:  WRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGMEIVWE-----

Query:  ----RFKDTWLHTQDFEQAVAGNWKADYPSGSP--SALATVASRCMSGLSRWGKPRTGNFASRIRAAIAWFQQ
            RF+  W+     E A+   W     SGSP  S +  + S C   L +W K +   +   I + +A  +Q
Subjt:  ----RFKDTWLHTQDFEQAVAGNWKADYPSGSP--SALATVASRCMSGLSRWGKPRTGNFASRIRAAIAWFQQ

A0A2N9EWI9 Reverse transcriptase domain-containing protein1.3e-1846.08Show/hide
Query:  IPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRR
        I +VV V  G  +WR  G YGHP+   ++ +WAL+ HLR  +V PW   GDFN ILFQ EK G   +PE ++  F + +  C L D+GF+G  FT  NRR
Subjt:  IPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRR

Query:  PG
         G
Subjt:  PG

A0A7N2KQ83 Uncharacterized protein4.1e-2045.28Show/hide
Query:  VQVDEGSRQ-WRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGM
        V V+ G    WRF G YG  + +L+  +W L++ L      PWL GGDFN +L  HEK GGRL+P  ++ +FCEA+  C L DLGF G  FT     P  
Subjt:  VQVDEGSRQ-WRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGM

Query:  EIVWER
         +VWER
Subjt:  EIVWER

S8DKM9 Reverse transcriptase domain-containing protein2.6e-1938.53Show/hide
Query:  IPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRR
        I  +V++     +WRF G YG+P  +L+ R+W L++ +R  S+ PWLV GDFN ++ Q+E +    +P  ++  F +A++ C L D+GF G PFT CN+R
Subjt:  IPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGSSVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRR

Query:  PGMEIVWER
           + V  R
Subjt:  PGMEIVWER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTTCACAAAGCGAGTTACAAACATATAAACACATTATGCAGTAGCAAAGCAAGTAAAGCAATAGCAAGCTCAAACATCAAACAAGCCCCACCAGTGTTG
TTGTGGTGGCGGAGGCTGGGTTCCAGCCCCGCCGGTCCCCATGAGTGTCCTACTTTGGAATGTACAAGGCTTGGGGTCGGCCAATGCATTCCGACGGTTGTACAA
GTAGATGAGGGGTCGAGGCAATGGAGATTCTTTGGGATCTATGGGCATCCCCAAGCAGAGTTGAAAACAAGAACATGGGCATTGATGAAACACCTTCGTGGGAGT
TCGGTAGCACCATGGTTAGTTGGGGGTGACTTTAATGCAATCCTGTTTCAACATGAGAAGGATGGGGGCAGGTTGAAACCAGAGGTAGAACTGGCTCGGTTTTGC
GAGGCGATGGTTGCTTGTGATTTAATGGATCTGGGTTTTAGAGGAGAGCCATTCACCTGTTGCAATAGAAGACCAGGGATGGAGATAGTTTGGGAGAGATTCAAA
GATACATGGCTTCACACTCAAGATTTTGAGCAAGCTGTGGCGGGGAACTGGAAAGCAGATTACCCTTCGGGATCTCCTTCTGCATTGGCGACAGTGGCAAGCAGG
TGTATGTCTGGGCTCAGTAGATGGGGGAAGCCAAGGACTGGGAATTTTGCCTCGCGTATTCGGGCTGCCATCGCTTGGTTCCAACAGGCAATGGGGTGGTTGGGA
AGGTCAGGCTCCCATGCGGAACTACTGGGTGCAGATGTTGGGTTTTATGCCCTAAAACTCGTAGCTAGTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTTCACAAAGCGAGTTACAAACATATAAACACATTATGCAGTAGCAAAGCAAGTAAAGCAATAGCAAGCTCAAACATCAAACAAGCCCCACCAGTGTTG
TTGTGGTGGCGGAGGCTGGGTTCCAGCCCCGCCGGTCCCCATGAGTGTCCTACTTTGGAATGTACAAGGCTTGGGGTCGGCCAATGCATTCCGACGGTTGTACAA
GTAGATGAGGGGTCGAGGCAATGGAGATTCTTTGGGATCTATGGGCATCCCCAAGCAGAGTTGAAAACAAGAACATGGGCATTGATGAAACACCTTCGTGGGAGT
TCGGTAGCACCATGGTTAGTTGGGGGTGACTTTAATGCAATCCTGTTTCAACATGAGAAGGATGGGGGCAGGTTGAAACCAGAGGTAGAACTGGCTCGGTTTTGC
GAGGCGATGGTTGCTTGTGATTTAATGGATCTGGGTTTTAGAGGAGAGCCATTCACCTGTTGCAATAGAAGACCAGGGATGGAGATAGTTTGGGAGAGATTCAAA
GATACATGGCTTCACACTCAAGATTTTGAGCAAGCTGTGGCGGGGAACTGGAAAGCAGATTACCCTTCGGGATCTCCTTCTGCATTGGCGACAGTGGCAAGCAGG
TGTATGTCTGGGCTCAGTAGATGGGGGAAGCCAAGGACTGGGAATTTTGCCTCGCGTATTCGGGCTGCCATCGCTTGGTTCCAACAGGCAATGGGGTGGTTGGGA
AGGTCAGGCTCCCATGCGGAACTACTGGGTGCAGATGTTGGGTTTTATGCCCTAAAACTCGTAGCTAGTAAATGA
Protein sequenceShow/hide protein sequence
MLVHKASYKHINTLCSSKASKAIASSNIKQAPPVLLWWRRLGSSPAGPHECPTLECTRLGVGQCIPTVVQVDEGSRQWRFFGIYGHPQAELKTRTWALMKHLRGS
SVAPWLVGGDFNAILFQHEKDGGRLKPEVELARFCEAMVACDLMDLGFRGEPFTCCNRRPGMEIVWERFKDTWLHTQDFEQAVAGNWKADYPSGSPSALATVASR
CMSGLSRWGKPRTGNFASRIRAAIAWFQQAMGWLGRSGSHAELLGADVGFYALKLVASK