CuGenDBv2

Gene ID	Lag0009159
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:36174096..36174611
RNA-Seq Expression	Lag0009159
Synteny	Lag0009159
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043826.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

2.7e-32

51.69

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK  IKYGRDSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI
          S  RSKS+GK+++C+ C KEGH ++NC  L   R+    +       N +E          GY+ A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

5.2e-31

51.12

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK  IKYG DSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI
          S  RSKS+GK+++C+ C KEGH ++NC  L   R+    +       N +E          GY+ A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.6e-32

51.41

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK  IKYGRDSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI
          S  RSKS+GK+++C+ C KEGH ++NC   K++    +E    +  ++  +++GYD        A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI

KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

2.3e-31

51.76

Show/hide

Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DL+NIG+ +SDEN+ +ILLNSLP +Y EVK  IKYGRDSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYDFAVVLMVSEIEI
          S  RSKS+GK+++C+ C K GH ++NC   K++    +E    +  +   +++GY+ A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYDFAVVLMVSEIEI

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.6e-32

51.41

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK  IKYGRDSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI
          S  RSKS+GK+++C+ C KEGH ++NC   K++    +E    +  ++  +++GYD        A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TP18 Putative gag-pol polyprotein

1.3e-32

51.69

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK  IKYGRDSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI
          S  RSKS+GK+++C+ C KEGH ++NC  L   R+    +       N +E          GY+ A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

2.5e-31

51.12

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK  IKYG DSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI
          S  RSKS+GK+++C+ C KEGH ++NC  L   R+    +       N +E          GY+ A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI

A0A5A7UB25 Putative gag-pol polyprotein

7.8e-33

51.41

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK  IKYGRDSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI
          S  RSKS+GK+++C+ C KEGH ++NC   K++    +E    +  ++  +++GYD        A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI

A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass

1.1e-31

51.76

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DL+NIG+ +SDEN+ +ILLNSLP +Y EVK  IKYGRDSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYDFAVVLMVSEIEI
          S  RSKS+GK+++C+ C K GH ++NC   K++    +E    +  +   +++GY+ A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYDFAVVLMVSEIEI

A0A5D3DNU1 Putative gag-pol polyprotein

7.8e-33

51.41

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT
        MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK  IKYGRDSLTM IVL+AL++R+LE+KK + K   L +ARGR+EKKS KG 
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGT

Query:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI
          S  RSKS+GK+++C+ C KEGH ++NC   K++    +E    +  ++  +++GYD        A VLMVS  +I
Subjt:  SSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.3e-04

24.68

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Query:  YNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIK-YGRDSLTMEIVLNALRSRDLEMKK----AKEKIMRLWIARGRTEKKS-------SKGTS
        ++ +  +L   G  + + +K+  LL +LP+ Y+ + T I+    ++LT+  V N L  +++++K       +K+M   +       K+       +K   
Subjt:  YNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIK-YGRDSLTMEIVLNALRSRDLEMKK----AKEKIMRLWIARGRTEKKS-------SKGTS

Query:  SSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSEGYDFAV
          +G SK + K   C++C +EGHI+++C+  K    N+ K+ E+      S G  F V
Subjt:  SSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSEGYDFAV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-12

32.18

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Query:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWI-ARGRTEKKSSK-
        M    +   +L+ +N +   L N+G  + +E+K I+LLNSLP+SY+ + TTI +G+ ++ ++ V +AL   +   KK + +   L    RGR+ ++SS  
Subjt:  MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWI-ARGRTEKKSSK-

Query:  -GTSSSRGRSKSQGKT--KRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE--GYDFAVVLMVSEIE
         G S +RG+SK++ K+  + CY C + GH +R+C    N RK +G+   + ++ N +     +  VVL ++E E
Subjt:  -GTSSSRGRSKSQGKT--KRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE--GYDFAVVLMVSEIE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATGCCTCGAAAGATCTGGAACAGAATTTAGATGAGTATAATCGAATTACTCTAGATCTAAATAATATAGGTAAGGCTGTATCTGATGAGAATAAGGTTATAATACT
GTTAAATTCCCTTCCAAATTCTTATAATGAGGTGAAAACCACAATCAAATATGGTAGAGATAGTTTAACTATGGAAATTGTACTGAATGCTCTTAGATCCAGAGACCTAG
AAATGAAAAAGGCAAAGGAAAAAATAATGAGGCTTTGGATAGCAAGAGGAAGAACTGAAAAGAAATCCTCTAAAGGTACTAGTAGCAGTCGGGGTAGATCTAAGTCCCAA
GGGAAAACCAAGAGGTGTTATTATTGTCAAAAGGAGGGGCACATTAGAAGAAACTGTTATGAATTAAAGAATAAGAGGAAGAATGAAGGTAAAAAGGAAGAGGAACCTCA
CAATGTGAATGTTTCAGAGGGTTATGATTTTGCTGTAGTGCTGATGGTTTCTGAAATTGAAATTAATAGTGATTGA

mRNA sequence

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Protein sequence

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MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGTSSSRGRSKSQ
GKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSEGYDFAVVLMVSEIEINSD

Lag0009159 (gene) of Sponge gourd (AG-4) v1 genome