; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0009160 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0009160
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr9:36179991..36181934
RNA-Seq ExpressionLag0009160
SyntenyLag0009160
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN73380.1 hypothetical protein VITISV_032547 [Vitis vinifera]4.9e-4333.99Show/hide
Query:  FTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLEK-----------QNSVEQLN---------
        +T++    +  PL++KL+  N+L+WKNQLLN V+ NGL G LD +   PPKFLD Q+L  NP+++ W R  +           +N + Q+          
Subjt:  FTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLEK-----------QNSVEQLN---------

Query:  ------LAQANLASL-----HLHNNSRKPPSRVPSNNAFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPL-QKWPPRS----NTSRPQCQIC---------
               A A++A L      L +  +K   + PS+     P + F   T+++N + PS+LG+PQ  PL + WP +     N S+P+CQIC         
Subjt:  ------LAQANLASL-----HLHNNSRKPPSRVPSNNAFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPL-QKWPPRS----NTSRPQCQIC---------

Query:  ---------------------------VSTLSTESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLD
                                    S+ +T S   D +W++DS  THH  PD S   +  P+ G E V VG+GKK+ IS  G S + S S  P+ L+
Subjt:  ---------------------------VSTLSTESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLD

Query:  SVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRL--ASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASV-AA
        ++LH PAL+ K++SV++LC DN  FVEF+  FFLVKD  + ++LL+G L +GLY++  AS P +SS                       S VFL S    
Subjt:  SVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRL--ASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASV-AA

Query:  PVWHLRLGH
         +WH RLGH
Subjt:  PVWHLRLGH

CAN83798.1 hypothetical protein VITISV_039072 [Vitis vinifera]9.6e-3934.69Show/hide
Query:  PPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLE
        PP P   +N       N  P PQ T  +L    P P+L Q LS+KL++TN LL K+QLLN ++ANGL  F+D    SPPK+LD    Q NP+F  W+RL 
Subjt:  PPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLE

Query:  --------------KQNSVEQLNLAQANLASLHLHNNSRKPPS--RVPSNNA-------------------------FRPPFNPFS-----SSTVSSNSY
                          + + + A+   ASL   N+  + PS   V S N+                         F     P S     +  ++ N Y
Subjt:  --------------KQNSVEQLNLAQANLASLHLHNNSRKPPS--RVPSNNA-------------------------FRPPFNPFS-----SSTVSSNSY

Query:  SPSLLGK-----PQTQPLQKWPPRSNTSRPQCQICVSTLST--ESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIP
          + L       P         P   +S     +  S   T   S   D +WY+DSGATHH  P+    T ++ Y   +H  VG+ K++GIS IG + + 
Subjt:  SPSLLGK-----PQTQPLQKWPPRSNTSRPQCQICVSTLST--ESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIP

Query:  SLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSV
        S S +P+ L+ VLHTP ++K+L+SV RL  DN+AFVEF+ +FFLVKD  T Q+LL+G LE GLY+LA   +++       SSS ++  S+      P+  
Subjt:  SLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSV

Query:  FLASVAAPV-WHLRLGHP
        FL+     V WH RLGHP
Subjt:  FLASVAAPV-WHLRLGHP

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]3.7e-3831.46Show/hide
Query:  SSSSSTGALTPPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPN
        +SS++  + TPP P  P + P P   +  P P P   +   L   P++ QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   PP+FLD Q+ Q N
Subjt:  SSSSSTGALTPPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPN

Query:  PDFTTWERLEK------QNSVEQLNLAQ-----------------------ANLASL----------------------HLHNN----------------
        P+F +W+R  +        S+ +  L Q                       A+L  L                      HL N+                
Subjt:  PDFTTWERLEK------QNSVEQLNLAQ-----------------------ANLASL----------------------HLHNN----------------

Query:  -----------------------SRKPPSRVPSNNAFRPPF-NPFSSSTVSSNSYSPSLLGKPQTQ---PLQKWPPRSNTSRPQCQICVS----------
                               S + P+  P++   +P F NP ++S  +SNSYS      P+ Q   P     P S   RP+CQIC+           
Subjt:  -----------------------SRKPPSRVPSNNAFRPPF-NPFSSSTVSSNSYSPSLLGKPQTQ---PLQKWPPRSNTSRPQCQICVS----------

Query:  ------------------------TLSTESYH--------PDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPV
                                +LST S          PD +WY+DSGA+HH  PD +    + PY G + VTVG+GK   IS IG + +P+ +   +
Subjt:  ------------------------TLSTESYH--------PDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPV

Query:  FLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAP--------SVSSHVPAVLSSSTAAVQSSLSATLQPS
         L  V H+P+L K LLSV+RLC DN AF+EF+ +FFLVK   T Q+LL+G L+ GLYR+ S+P         V  H+     S+ +A  +S +  L PS
Subjt:  FLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAP--------SVSSHVPAVLSSSTAAVQSSLSATLQPS

RVW64278.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]9.6e-3928.85Show/hide
Query:  SLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWE------------------------------
        S F  +  P+L Q  +V+L+ +N+LLW+ Q+LN ++ANGL   + G +P+P +FL D     NP+++ W+                              
Subjt:  SLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWE------------------------------

Query:  ------------------------------------------------------------------RLEKQNSVEQLNLAQANLASLHL-----------
                                                                          RLE+Q++ E+ NL QAN+ ++++           
Subjt:  ------------------------------------------------------------------RLEKQNSVEQLNLAQANLASLHL-----------

Query:  ----------------HNNSRKPPSRVPSNN--------AFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPLQKWPPRS--------NTSRPQCQICVSTL
                        H N  +   R   NN          R  FN  S S+ + N+ S    GKPQ Q   K+   +         T +P     ++ +
Subjt:  ----------------HNNSRKPPSRVPSNN--------AFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPLQKWPPRS--------NTSRPQCQICVSTL

Query:  -STESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHS
         +T S   DE+WY+D+GATHH+ P+ +      P+ G++ V VG+G ++ IS IG S I S S+  + L ++LH P LT  L+SV RLC DN   VEF +
Subjt:  -STESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHS

Query:  SFFLVKDLHTNQILLKGILEDGLYRL-ASAPSVSSHVPAVLSSSTAAVQSSLSATLQ-PSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVH
        + F+VKD  + + LL+G L  GLY+L +SAPS     P     +  A ++SL+  +   SS    S  A +WH RLGHP     R+I++K+  +CS  + 
Subjt:  SFFLVKDLHTNQILLKGILEDGLYRL-ASAPSVSSHVPAVLSSSTAAVQSSLSATLQ-PSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVH

Query:  ---GICSSCQMAKSHRLPFS
           G+C  CQMAKSHRLPF+
Subjt:  ---GICSSCQMAKSHRLPFS

RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.3e-4833.27Show/hide
Query:  PPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLE
        PP P   +N       N  P PQ T  +L    P P+L Q LS+KL++TN LL K+QLLN ++ANGL  F+D    SPPK+LD    Q NP+F  W+RL 
Subjt:  PPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLE

Query:  K--------------QNSVEQLNLAQANLASLHLHNNSRKPPS--RVPSNNA------------------FRPPFNPFSS--------------------
        +                 + + + A+   ASL   N+  + PS   V S N+                   +  F+ F++                    
Subjt:  K--------------QNSVEQLNLAQANLASLHLHNNSRKPPS--RVPSNNA------------------FRPPFNPFSS--------------------

Query:  ------STVSSNSYSPSL----------------------LGKPQTQPLQKWPPRSNTSRPQCQIC----------------------------------
              +++ + S  PSL                      L  PQ  P Q   P  N S PQCQIC                                  
Subjt:  ------STVSSNSYSPSL----------------------LGKPQTQPLQKWPPRSNTSRPQCQIC----------------------------------

Query:  ------VSTLSTESYHP--------DENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLL
              +S + T S  P        D +WY+DSGATHH  P+    T ++ Y   +H  VG+ K++GIS IG + + S S +P+ L+ VLHTP ++K+L+
Subjt:  ------VSTLSTESYHP--------DENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLL

Query:  SVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASVAAPV-WHLRLGHPGDATL
        SV RL  DN+AFVEF+ +FFLVKD  T Q+LL+G LE GLY+LA   +++       SSS ++  S+      P+  FL+     V WH RLGHP    +
Subjt:  SVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASVAAPV-WHLRLGHPGDATL

Query:  RQILSKLNVSCSSSVHGICSSCQMAKSHRLPF
         Q+L   N+  S+S H ICSSCQ+AKSHRLPF
Subjt:  RQILSKLNVSCSSSVHGICSSCQMAKSHRLPF

TrEMBL top hitse value%identityAlignment
A0A438FWG3 Retrovirus-related Pol polyprotein from transposon RE14.7e-3928.85Show/hide
Query:  SLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWE------------------------------
        S F  +  P+L Q  +V+L+ +N+LLW+ Q+LN ++ANGL   + G +P+P +FL D     NP+++ W+                              
Subjt:  SLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWE------------------------------

Query:  ------------------------------------------------------------------RLEKQNSVEQLNLAQANLASLHL-----------
                                                                          RLE+Q++ E+ NL QAN+ ++++           
Subjt:  ------------------------------------------------------------------RLEKQNSVEQLNLAQANLASLHL-----------

Query:  ----------------HNNSRKPPSRVPSNN--------AFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPLQKWPPRS--------NTSRPQCQICVSTL
                        H N  +   R   NN          R  FN  S S+ + N+ S    GKPQ Q   K+   +         T +P     ++ +
Subjt:  ----------------HNNSRKPPSRVPSNN--------AFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPLQKWPPRS--------NTSRPQCQICVSTL

Query:  -STESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHS
         +T S   DE+WY+D+GATHH+ P+ +      P+ G++ V VG+G ++ IS IG S I S S+  + L ++LH P LT  L+SV RLC DN   VEF +
Subjt:  -STESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHS

Query:  SFFLVKDLHTNQILLKGILEDGLYRL-ASAPSVSSHVPAVLSSSTAAVQSSLSATLQ-PSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVH
        + F+VKD  + + LL+G L  GLY+L +SAPS     P     +  A ++SL+  +   SS    S  A +WH RLGHP     R+I++K+  +CS  + 
Subjt:  SFFLVKDLHTNQILLKGILEDGLYRL-ASAPSVSSHVPAVLSSSTAAVQSSLSATLQ-PSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVH

Query:  ---GICSSCQMAKSHRLPFS
           G+C  CQMAKSHRLPF+
Subjt:  ---GICSSCQMAKSHRLPFS

A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE11.1e-4833.27Show/hide
Query:  PPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLE
        PP P   +N       N  P PQ T  +L    P P+L Q LS+KL++TN LL K+QLLN ++ANGL  F+D    SPPK+LD    Q NP+F  W+RL 
Subjt:  PPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLE

Query:  K--------------QNSVEQLNLAQANLASLHLHNNSRKPPS--RVPSNNA------------------FRPPFNPFSS--------------------
        +                 + + + A+   ASL   N+  + PS   V S N+                   +  F+ F++                    
Subjt:  K--------------QNSVEQLNLAQANLASLHLHNNSRKPPS--RVPSNNA------------------FRPPFNPFSS--------------------

Query:  ------STVSSNSYSPSL----------------------LGKPQTQPLQKWPPRSNTSRPQCQIC----------------------------------
              +++ + S  PSL                      L  PQ  P Q   P  N S PQCQIC                                  
Subjt:  ------STVSSNSYSPSL----------------------LGKPQTQPLQKWPPRSNTSRPQCQIC----------------------------------

Query:  ------VSTLSTESYHP--------DENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLL
              +S + T S  P        D +WY+DSGATHH  P+    T ++ Y   +H  VG+ K++GIS IG + + S S +P+ L+ VLHTP ++K+L+
Subjt:  ------VSTLSTESYHP--------DENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLL

Query:  SVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASVAAPV-WHLRLGHPGDATL
        SV RL  DN+AFVEF+ +FFLVKD  T Q+LL+G LE GLY+LA   +++       SSS ++  S+      P+  FL+     V WH RLGHP    +
Subjt:  SVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASVAAPV-WHLRLGHPGDATL

Query:  RQILSKLNVSCSSSVHGICSSCQMAKSHRLPF
         Q+L   N+  S+S H ICSSCQ+AKSHRLPF
Subjt:  RQILSKLNVSCSSSVHGICSSCQMAKSHRLPF

A0A7J0GPN0 UBX domain-containing protein1.8e-3831.46Show/hide
Query:  SSSSSTGALTPPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPN
        +SS++  + TPP P  P + P P   +  P P P   +   L   P++ QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   PP+FLD Q+ Q N
Subjt:  SSSSSTGALTPPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPN

Query:  PDFTTWERLEK------QNSVEQLNLAQ-----------------------ANLASL----------------------HLHNN----------------
        P+F +W+R  +        S+ +  L Q                       A+L  L                      HL N+                
Subjt:  PDFTTWERLEK------QNSVEQLNLAQ-----------------------ANLASL----------------------HLHNN----------------

Query:  -----------------------SRKPPSRVPSNNAFRPPF-NPFSSSTVSSNSYSPSLLGKPQTQ---PLQKWPPRSNTSRPQCQICVS----------
                               S + P+  P++   +P F NP ++S  +SNSYS      P+ Q   P     P S   RP+CQIC+           
Subjt:  -----------------------SRKPPSRVPSNNAFRPPF-NPFSSSTVSSNSYSPSLLGKPQTQ---PLQKWPPRSNTSRPQCQICVS----------

Query:  ------------------------TLSTESYH--------PDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPV
                                +LST S          PD +WY+DSGA+HH  PD +    + PY G + VTVG+GK   IS IG + +P+ +   +
Subjt:  ------------------------TLSTESYH--------PDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPV

Query:  FLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAP--------SVSSHVPAVLSSSTAAVQSSLSATLQPS
         L  V H+P+L K LLSV+RLC DN AF+EF+ +FFLVK   T Q+LL+G L+ GLYR+ S+P         V  H+     S+ +A  +S +  L PS
Subjt:  FLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAP--------SVSSHVPAVLSSSTAAVQSSLSATLQPS

A5AG90 Uncharacterized protein2.4e-4333.99Show/hide
Query:  FTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLEK-----------QNSVEQLN---------
        +T++    +  PL++KL+  N+L+WKNQLLN V+ NGL G LD +   PPKFLD Q+L  NP+++ W R  +           +N + Q+          
Subjt:  FTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLEK-----------QNSVEQLN---------

Query:  ------LAQANLASL-----HLHNNSRKPPSRVPSNNAFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPL-QKWPPRS----NTSRPQCQIC---------
               A A++A L      L +  +K   + PS+     P + F   T+++N + PS+LG+PQ  PL + WP +     N S+P+CQIC         
Subjt:  ------LAQANLASL-----HLHNNSRKPPSRVPSNNAFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPL-QKWPPRS----NTSRPQCQIC---------

Query:  ---------------------------VSTLSTESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLD
                                    S+ +T S   D +W++DS  THH  PD S   +  P+ G E V VG+GKK+ IS  G S + S S  P+ L+
Subjt:  ---------------------------VSTLSTESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLD

Query:  SVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRL--ASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASV-AA
        ++LH PAL+ K++SV++LC DN  FVEF+  FFLVKD  + ++LL+G L +GLY++  AS P +SS                       S VFL S    
Subjt:  SVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRL--ASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASV-AA

Query:  PVWHLRLGH
         +WH RLGH
Subjt:  PVWHLRLGH

A5C0U6 Reverse transcriptase Ty1/copia-type domain-containing protein4.7e-3934.69Show/hide
Query:  PPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLE
        PP P   +N       N  P PQ T  +L    P P+L Q LS+KL++TN LL K+QLLN ++ANGL  F+D    SPPK+LD    Q NP+F  W+RL 
Subjt:  PPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQPNPDFTTWERLE

Query:  --------------KQNSVEQLNLAQANLASLHLHNNSRKPPS--RVPSNNA-------------------------FRPPFNPFS-----SSTVSSNSY
                          + + + A+   ASL   N+  + PS   V S N+                         F     P S     +  ++ N Y
Subjt:  --------------KQNSVEQLNLAQANLASLHLHNNSRKPPS--RVPSNNA-------------------------FRPPFNPFS-----SSTVSSNSY

Query:  SPSLLGK-----PQTQPLQKWPPRSNTSRPQCQICVSTLST--ESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIP
          + L       P         P   +S     +  S   T   S   D +WY+DSGATHH  P+    T ++ Y   +H  VG+ K++GIS IG + + 
Subjt:  SPSLLGK-----PQTQPLQKWPPRSNTSRPQCQICVSTLST--ESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIP

Query:  SLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSV
        S S +P+ L+ VLHTP ++K+L+SV RL  DN+AFVEF+ +FFLVKD  T Q+LL+G LE GLY+LA   +++       SSS ++  S+      P+  
Subjt:  SLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSV

Query:  FLASVAAPV-WHLRLGHP
        FL+     V WH RLGHP
Subjt:  FLASVAAPV-WHLRLGHP

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.2e-2531.54Show/hide
Query:  HNNSRKPPSRV-----PSNNAFRPPFNPFSSSTVSSNS---------YSPSLLGKPQTQPLQKWPPRSNTSRPQCQICVSTLSTESYHPDENWYLDSGAT
        +NN+ KP  +      P+NN  +P         V  +S         +  S+  +    P   W PR+N            L+  S +   NW LDSGAT
Subjt:  HNNSRKPPSRV-----PSNNAFRPPFNPFSSSTVSSNS---------YSPSLLGKPQTQPLQKWPPRSNTSRPQCQICVSTLSTESYHPDENWYLDSGAT

Query:  HHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGIL
        HH+  D ++ +   PY G + V V DG  + IS  G++ + S   +P+ L ++L+ P + K L+SV RLC  N   VEF  + F VKDL+T   LL+G  
Subjt:  HHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGIL

Query:  EDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVHGI--CSSCQMAKSHRLPFS
        +D LY    A   S  V    S S+ A  SS                   WH RLGHP  + L  ++S  ++S  +  H    CS C + KS+++PFS
Subjt:  EDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVHGI--CSSCQMAKSHRLPFS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.2e-2733.58Show/hide
Query:  PPFNPFSSSTVSSNSYSPSLLGKPQTQPLQKWPPRSNTSRPQCQICVSTLSTESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGI
        P  + F S+T    S          T P   W PR+N            L+  S +   NW LDSGATHH+  D ++ +   PY G + V + DG  + I
Subjt:  PPFNPFSSSTVSSNSYSPSLLGKPQTQPLQKWPPRSNTSRPQCQICVSTLSTESYHPDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGI

Query:  SLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYR--LASAPSVSSHVPAVLSSSTAAVQS
        +  G++ +P+ S + + L+ VL+ P + K L+SV RLC  NR  VEF  + F VKDL+T   LL+G  +D LY   +AS+ +VS       S  + A  S
Subjt:  SLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQILLKGILEDGLYR--LASAPSVSSHVPAVLSSSTAAVQS

Query:  SLSATLQPSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVHGI--CSSCQMAKSHRLPFS
        S                   WH RLGHP  A L  ++S  ++   +  H +  CS C + KSH++PFS
Subjt:  SLSATLQPSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVHGI--CSSCQMAKSHRLPFS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACCGAAGCTTCTTCCTCTTCTTCTTCGACTGGTGCCCTTACTCCACCACTGCCCTATTACCCAAACAATTTTCCCCGACCACCGATTCCCAACTACTTT
CCACCACCTCAACCGACTAATCCCTCACTCTTCACTCTAAACCCTTATCCTACCTTGCCTCAGCCCCTTAGTGTCAAGCTCAACGACACTAATTTCTTGCTATGG
AAGAACCAACTGTTGAATCCTGTCCTTGCTAATGGTCTACACGGGTTTCTCGATGGTTCTGTTCCTTCTCCACCCAAGTTCCTCGATGATCAACGGCTGCAACCT
AATCCTGATTTCACTACATGGGAAAGGTTGGAAAAACAAAATAGTGTCGAACAACTTAACTTAGCTCAGGCGAATCTTGCTAGTCTTCATCTCCACAATAACAGT
CGCAAACCTCCATCTCGAGTGCCTTCGAACAATGCTTTTAGACCTCCCTTCAATCCATTTTCTTCCTCCACTGTTTCATCAAATTCATATTCTCCTAGTCTACTT
GGCAAACCACAAACTCAACCTCTCCAAAAATGGCCTCCCCGGTCTAATACTAGCCGCCCCCAATGCCAAATTTGTGTCTCTACCCTTTCCACGGAATCATATCAC
CCTGATGAGAACTGGTACCTTGACTCTGGTGCAACACATCACATGATGCCAGATGCCTCTTCTTTCACTCATTCTATACCATATGGTGGTGCTGAACATGTCACT
GTTGGGGATGGTAAGAAAGTTGGTATATCTCTTATTGGTACTTCTTTTATTCCTTCTTTATCTCAACAACCTGTTTTTCTTGATTCAGTTCTCCATACCCCTGCT
CTTACTAAAAAGTTGCTTAGTGTCGCTCGTCTTTGTAAAGATAATCGTGCTTTTGTTGAATTTCACTCTTCTTTTTTTCTTGTTAAGGACCTTCACACCAACCAA
ATACTACTCAAGGGAATCCTTGAAGATGGCCTTTATCGTTTGGCTTCTGCTCCTTCAGTGTCTTCACATGTCCCTGCTGTTCTGTCCTCTTCTACAGCTGCTGTC
CAGTCCTCGTTATCAGCTACTCTCCAGCCATCTTCTGTTTTCTTGGCTTCGGTTGCTGCCCCAGTTTGGCACTTGCGGTTGGGTCATCCTGGTGATGCTACTCTA
CGTCAAATTTTGTCCAAGCTTAATGTGTCTTGTTCTTCTTCTGTTCATGGCATTTGTAGCTCTTGTCAAATGGCTAAAAGCCATCGTTTACCTTTTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACCGAAGCTTCTTCCTCTTCTTCTTCGACTGGTGCCCTTACTCCACCACTGCCCTATTACCCAAACAATTTTCCCCGACCACCGATTCCCAACTACTTT
CCACCACCTCAACCGACTAATCCCTCACTCTTCACTCTAAACCCTTATCCTACCTTGCCTCAGCCCCTTAGTGTCAAGCTCAACGACACTAATTTCTTGCTATGG
AAGAACCAACTGTTGAATCCTGTCCTTGCTAATGGTCTACACGGGTTTCTCGATGGTTCTGTTCCTTCTCCACCCAAGTTCCTCGATGATCAACGGCTGCAACCT
AATCCTGATTTCACTACATGGGAAAGGTTGGAAAAACAAAATAGTGTCGAACAACTTAACTTAGCTCAGGCGAATCTTGCTAGTCTTCATCTCCACAATAACAGT
CGCAAACCTCCATCTCGAGTGCCTTCGAACAATGCTTTTAGACCTCCCTTCAATCCATTTTCTTCCTCCACTGTTTCATCAAATTCATATTCTCCTAGTCTACTT
GGCAAACCACAAACTCAACCTCTCCAAAAATGGCCTCCCCGGTCTAATACTAGCCGCCCCCAATGCCAAATTTGTGTCTCTACCCTTTCCACGGAATCATATCAC
CCTGATGAGAACTGGTACCTTGACTCTGGTGCAACACATCACATGATGCCAGATGCCTCTTCTTTCACTCATTCTATACCATATGGTGGTGCTGAACATGTCACT
GTTGGGGATGGTAAGAAAGTTGGTATATCTCTTATTGGTACTTCTTTTATTCCTTCTTTATCTCAACAACCTGTTTTTCTTGATTCAGTTCTCCATACCCCTGCT
CTTACTAAAAAGTTGCTTAGTGTCGCTCGTCTTTGTAAAGATAATCGTGCTTTTGTTGAATTTCACTCTTCTTTTTTTCTTGTTAAGGACCTTCACACCAACCAA
ATACTACTCAAGGGAATCCTTGAAGATGGCCTTTATCGTTTGGCTTCTGCTCCTTCAGTGTCTTCACATGTCCCTGCTGTTCTGTCCTCTTCTACAGCTGCTGTC
CAGTCCTCGTTATCAGCTACTCTCCAGCCATCTTCTGTTTTCTTGGCTTCGGTTGCTGCCCCAGTTTGGCACTTGCGGTTGGGTCATCCTGGTGATGCTACTCTA
CGTCAAATTTTGTCCAAGCTTAATGTGTCTTGTTCTTCTTCTGTTCATGGCATTTGTAGCTCTTGTCAAATGGCTAAAAGCCATCGTTTACCTTTTAGCTGA
Protein sequenceShow/hide protein sequence
MSTEASSSSSSTGALTPPLPYYPNNFPRPPIPNYFPPPQPTNPSLFTLNPYPTLPQPLSVKLNDTNFLLWKNQLLNPVLANGLHGFLDGSVPSPPKFLDDQRLQP
NPDFTTWERLEKQNSVEQLNLAQANLASLHLHNNSRKPPSRVPSNNAFRPPFNPFSSSTVSSNSYSPSLLGKPQTQPLQKWPPRSNTSRPQCQICVSTLSTESYH
PDENWYLDSGATHHMMPDASSFTHSIPYGGAEHVTVGDGKKVGISLIGTSFIPSLSQQPVFLDSVLHTPALTKKLLSVARLCKDNRAFVEFHSSFFLVKDLHTNQ
ILLKGILEDGLYRLASAPSVSSHVPAVLSSSTAAVQSSLSATLQPSSVFLASVAAPVWHLRLGHPGDATLRQILSKLNVSCSSSVHGICSSCQMAKSHRLPFS