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Lag0009172 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0009172
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein Ycf2
Genome locationchr9:36423736..36424044
RNA-Seq ExpressionLag0009172
SyntenyLag0009172
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR008543 - Uncharacterised protein family Ycf2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QFR99521.1 hypothetical chloroplast RF21 [Rubus leucanthus]3.2e-0472.41Show/hide
Query:  KKCIMPESNWGSRWWRNWADLSSPSNDHC
        KKCIMPESNWGSRWWRNW      SN  C
Subjt:  KKCIMPESNWGSRWWRNWADLSSPSNDHC
QGW48395.1 hypothetical protein [Raphanus sativus]5.5e-0492.31Show/hide
Query:  MDCFFRLFRRQSAYGTSSYLVTRKKC
        MDCFFRLFRRQSAYGTSSYLVTR  C
Subjt:  MDCFFRLFRRQSAYGTSSYLVTRKKC
YP_009228116.1 hypothetical protein AYB38_gp32 [Brassica nigra]5.5e-0492.31Show/hide
Query:  MDCFFRLFRRQSAYGTSSYLVTRKKC
        MDCFFRLFRRQSAYGTSSYLVTR  C
Subjt:  MDCFFRLFRRQSAYGTSSYLVTRKKC
YP_010016590.1 Ycf2 [Scurrula chingii]9.3e-0490.48Show/hide
Query:  VTRKKCIMPESNWGSRWWRNW
        +T KKCIMPESNWGSRWWRNW
Subjt:  VTRKKCIMPESNWGSRWWRNW
YP_010141261.1 hypothetical chloroplast RF21 [Rubus xanthocarpus]3.2e-0472.41Show/hide
Query:  KKCIMPESNWGSRWWRNWADLSSPSNDHC
        KKCIMPESNWGSRWWRNW      SN  C
Subjt:  KKCIMPESNWGSRWWRNWADLSSPSNDHC
TrEMBL top hitse value%identityAlignment
A0A0U1YJ72 Uncharacterized protein2.7e-0492.31Show/hide
Query:  MDCFFRLFRRQSAYGTSSYLVTRKKC
        MDCFFRLFRRQSAYGTSSYLVTR  C
Subjt:  MDCFFRLFRRQSAYGTSSYLVTRKKC
A0A5P8SZ36 Protein Ycf21.6e-0472.41Show/hide
Query:  KKCIMPESNWGSRWWRNWADLSSPSNDHC
        KKCIMPESNWGSRWWRNW      SN  C
Subjt:  KKCIMPESNWGSRWWRNWADLSSPSNDHC
A0A650GBQ5 Uncharacterized protein2.7e-0492.31Show/hide
Query:  MDCFFRLFRRQSAYGTSSYLVTRKKC
        MDCFFRLFRRQSAYGTSSYLVTR  C
Subjt:  MDCFFRLFRRQSAYGTSSYLVTRKKC
A0A7M3US17 Protein Ycf24.5e-0490.48Show/hide
Query:  VTRKKCIMPESNWGSRWWRNW
        +T KKCIMPESNWGSRWWRNW
Subjt:  VTRKKCIMPESNWGSRWWRNW
A0A7T6ZSU6 Hypothetical chloroplast RF211.6e-0472.41Show/hide
Query:  KKCIMPESNWGSRWWRNWADLSSPSNDHC
        KKCIMPESNWGSRWWRNW      SN  C
Subjt:  KKCIMPESNWGSRWWRNWADLSSPSNDHC
SwissProt top hitse value%identityAlignment
A1XFZ9 Protein Ycf21.4e-05100Show/hide
Query:  KKCIMPESNWGSRWWRNW
        KKCIMPESNWGSRWWRNW
Subjt:  KKCIMPESNWGSRWWRNW
A6MM80 Protein Ycf21.4e-05100Show/hide
Query:  KKCIMPESNWGSRWWRNW
        KKCIMPESNWGSRWWRNW
Subjt:  KKCIMPESNWGSRWWRNW
Q09WV7 Protein Ycf21.0e-0553.19Show/hide
Query:  KKCIMPESNWGSRWWRNWADLSSPSNDHCLMQVDEERTRIKNSVEKK
        KKCIMPESNWGSRWWRNW  L    +  C +  +E  T I+ S ++K
Subjt:  KKCIMPESNWGSRWWRNWADLSSPSNDHCLMQVDEERTRIKNSVEKK
Q0ZIV6 Protein Ycf21.4e-05100Show/hide
Query:  KKCIMPESNWGSRWWRNW
        KKCIMPESNWGSRWWRNW
Subjt:  KKCIMPESNWGSRWWRNW
Q49KT6 Protein Ycf21.4e-05100Show/hide
Query:  KKCIMPESNWGSRWWRNW
        KKCIMPESNWGSRWWRNW
Subjt:  KKCIMPESNWGSRWWRNW
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core1.4e-0588.89Show/hide
Query:  KKCIMPESNWGSRWWRNW
        +KCIMPESNW SRWWRNW
Subjt:  KKCIMPESNWGSRWWRNW
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core1.4e-0588.89Show/hide
Query:  KKCIMPESNWGSRWWRNW
        +KCIMPESNW SRWWRNW
Subjt:  KKCIMPESNWGSRWWRNW
ATMG01330.1 hypothetical protein1.2e-0474.19Show/hide
Query:  ERTRIKNSVEKKLSSSFPSLPGPKAVQSFLA
        E+ R K SVE+K  SSFPS PGPKAVQSFLA
Subjt:  ERTRIKNSVEKKLSSSFPSLPGPKAVQSFLA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGCTTCTTTCGCCTCTTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCCGAAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTG
GTGGAGGAACTGGGCAGACCTTAGCTCCCCTTCCAATGATCACTGCCTCATGCAGGTAGATGAGGAACGAACACGGATAAAAAACAGTGTGGAGAAGAAGCTGTCGAGCT
CATTCCCTTCGCTTCCTGGGCCCAAAGCAGTGCAGTCTTTCCTGGCCGGGTATTCGTCACCCAGCTCCACTACTCACAAGCCCCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGCTTCTTTCGCCTCTTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCCGAAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTG
GTGGAGGAACTGGGCAGACCTTAGCTCCCCTTCCAATGATCACTGCCTCATGCAGGTAGATGAGGAACGAACACGGATAAAAAACAGTGTGGAGAAGAAGCTGTCGAGCT
CATTCCCTTCGCTTCCTGGGCCCAAAGCAGTGCAGTCTTTCCTGGCCGGGTATTCGTCACCCAGCTCCACTACTCACAAGCCCCCCTAA
Protein sequenceShow/hide protein sequence
MDCFFRLFRRQSAYGTSSYLVTRKKCIMPESNWGSRWWRNWADLSSPSNDHCLMQVDEERTRIKNSVEKKLSSSFPSLPGPKAVQSFLAGYSSPSSTTHKPP