; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0009175 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0009175
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase III subunit RPC3
Genome locationchr9:36451407..36453098
RNA-Seq ExpressionLag0009175
SyntenyLag0009175
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033658.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa]3.3e-2872.22Show/hide
Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRG+KA+KI E+P TLEQ L+E   P+EVLRFS+G+ + E    E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

TYK22958.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa]3.3e-2872.22Show/hide
Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRG+KA+KI E+P TLEQ L+E   P+EVLRFS+G+ + E    E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

XP_008439232.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo]3.3e-2872.22Show/hide
Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRG+KA+KI E+P TLEQ L+E   P+EVLRFS+G+ + E    E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

XP_008439235.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo]3.3e-2872.22Show/hide
Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRG+KA+KI E+P TLEQ L+E   P+EVLRFS+G+ + E    E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

XP_022968436.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima]5.7e-2870.33Show/hide
Query:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        +  GN PIP+VV++SL KLLNAHFVERCP PEPTLSPQVEEQPPPRKRG+KA+K+SE+P TLEQ L+E+  PMEV+RFSIGE + E    E
Subjt:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

TrEMBL top hitse value%identityAlignment
A0A1S3AYY3 DNA-directed RNA polymerase III subunit RPC31.6e-2872.22Show/hide
Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRG+KA+KI E+P TLEQ L+E   P+EVLRFS+G+ + E    E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

A0A1S4DT15 DNA-directed RNA polymerase III subunit RPC31.6e-2872.22Show/hide
Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRG+KA+KI E+P TLEQ L+E   P+EVLRFS+G+ + E    E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

A0A5A7SSU3 DNA-directed RNA polymerase III subunit RPC31.6e-2872.22Show/hide
Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRG+KA+KI E+P TLEQ L+E   P+EVLRFS+G+ + E    E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

A0A5D3DHJ0 DNA-directed RNA polymerase III subunit RPC31.6e-2872.22Show/hide
Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRG+KA+KI E+P TLEQ L+E   P+EVLRFS+G+ + E    E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

A0A6J1HUV1 DNA-directed RNA polymerase III subunit RPC32.7e-2870.33Show/hide
Query:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE
        +  GN PIP+VV++SL KLLNAHFVERCP PEPTLSPQVEEQPPPRKRG+KA+K+SE+P TLEQ L+E+  PMEV+RFSIGE + E    E
Subjt:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGEGDQEEVPGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G49000.1 RNA polymerase III subunit RPC82 family protein2.0e-1042.5Show/hide
Query:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSI
        R  GN      + DSL KL+ A FVER P PEP L    +E+ P ++RG+KA+KI + P TLE+ ++E   P++ +RF +
Subjt:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCACCGTCGCTGCCTAGGTCTAGCGAAACACTCCCGCCGTTGTTCGTGGGTTACTCTTTCTTCGTTCAAATCTACTTGCGGCGTGTGGGAAACCATCCAATTCC
AAATGTTGTACATGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTCGAACGTTGTCCAATCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAACCTCCTCCTA
GGAAAAGAGGTTCTAAGGCTTCCAAGATATCTGAGATGCCAGCAACCTTAGAGCAACCTCTTCTAGAAACAATCCATCCAATGGAAGTTCTAAGATTTTCAATAGGTGAA
GGAGACCAAGAAGAGGTTCCAGGAGAGTTTCAAGATCGGGAAGAACATGTGGTTTTTCACCAAGCTCAGGTTCTGAAGAGTCTTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATCACCGTCGCTGCCTAGGTCTAGCGAAACACTCCCGCCGTTGTTCGTGGGTTACTCTTTCTTCGTTCAAATCTACTTGCGGCGTGTGGGAAACCATCCAATTCC
AAATGTTGTACATGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTCGAACGTTGTCCAATCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAACCTCCTCCTA
GGAAAAGAGGTTCTAAGGCTTCCAAGATATCTGAGATGCCAGCAACCTTAGAGCAACCTCTTCTAGAAACAATCCATCCAATGGAAGTTCTAAGATTTTCAATAGGTGAA
GGAGACCAAGAAGAGGTTCCAGGAGAGTTTCAAGATCGGGAAGAACATGTGGTTTTTCACCAAGCTCAGGTTCTGAAGAGTCTTATCTAG
Protein sequenceShow/hide protein sequence
MKSPSLPRSSETLPPLFVGYSFFVQIYLRRVGNHPIPNVVHDSLFKLLNAHFVERCPIPEPTLSPQVEEQPPPRKRGSKASKISEMPATLEQPLLETIHPMEVLRFSIGE
GDQEEVPGEFQDREEHVVFHQAQVLKSLI