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Lag0009200 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0009200
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr9:36718533..36720551
RNA-Seq ExpressionLag0009200
SyntenyLag0009200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008236936.1 PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Prunus mume]2.9e-2448.09Show/hide
Query:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS
        KGLVKP G  +IE+DG IH FA GDSGHPEAE+IYRK +EI   L++E Y+PKL E+LLE+ D  K                           +++   S
Subjt:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS

Query:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
        CE CH  MKL+SK Y  EIIM+DR  FHHF+
Subjt:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

XP_015869041.1 pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus jujuba]2.6e-2550.75Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRF----------YG---------------
        M  KGLVKP G  KIE+DG IH FA GDSGHPEAE IY K DEI  QL ++ Y+PK+ E+LLE+ D  K  +           YG               
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRF----------YG---------------

Query:  --SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
          SC +CH FMK+VSKTY  EIIM+DR  FHHFR
Subjt:  --SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

XP_015872293.1 pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus jujuba]7.5e-2550Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRF----------YG---------------
        M  KGLVKP G  KIE+DG IH FA GDSGHPEAE IY K DEI  QL ++ Y+PK+ E+LLE+ D  K  +           YG               
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRF----------YG---------------

Query:  --SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
          SC +CH FMK+VSKT+  EIIM+DR  FHHFR
Subjt:  --SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

XP_034228644.1 pentatricopeptide repeat-containing protein At4g21065-like [Prunus dulcis]3.7e-2448.09Show/hide
Query:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS
        KGLVKP G  +IE+DG IH FA GDSGHPEAE+IYRK +EI   L++E Y+PKL E+LLE+ D  K                           +++   S
Subjt:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS

Query:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
        CE CH  MKL+SK Y  EIIM+DR  FHHF+
Subjt:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

XP_034228706.1 pentatricopeptide repeat-containing protein At4g21065-like [Prunus dulcis]3.7e-2448.09Show/hide
Query:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS
        KGLVKP G  +IE+DG IH FA GDSGHPEAE+IYRK +EI   L++E Y+PKL E+LLE+ D  K                           +++   S
Subjt:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS

Query:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
        CE CH  MKL+SK Y  EIIM+DR  FHHF+
Subjt:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

TrEMBL top hitse value%identityAlignment
A0A498K2V5 DYW_deaminase domain-containing protein4.0e-2448.09Show/hide
Query:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS
        KGLVKP G  +IE+DG IH FA GDSGHPEAE+IYRK +EI   L++E Y PKL E+LLE+ D  K                           +++   S
Subjt:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS

Query:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
        CE CH  MKL+SK Y  EIIM+DR  FHHF+
Subjt:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

A0A5E4GB73 PREDICTED: pentatricopeptide repeat-containing1.8e-2448.09Show/hide
Query:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS
        KGLVKP G  +IE+DG IH FA GDSGHPEAE+IYRK +EI   L++E Y+PKL E+LLE+ D  K                           +++   S
Subjt:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS

Query:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
        CE CH  MKL+SK Y  EIIM+DR  FHHF+
Subjt:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

A0A5N5I7Y2 Pentatricopeptide repeat-containing protein4.0e-2448.09Show/hide
Query:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS
        KGLVKP G  +IE+DG IH FA GDSGHPEAE+IYRK +EI   L++E Y PKL E+LLE+ D  K                           +++   S
Subjt:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRFYGS

Query:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
        CE CH  MKL+SK Y  EIIM+DR  FHHF+
Subjt:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

A0A6P3YYC4 pentatricopeptide repeat-containing protein At4g21065-like1.2e-2550.75Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRF----------YG---------------
        M  KGLVKP G  KIE+DG IH FA GDSGHPEAE IY K DEI  QL ++ Y+PK+ E+LLE+ D  K  +           YG               
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRF----------YG---------------

Query:  --SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
          SC +CH FMK+VSKTY  EIIM+DR  FHHFR
Subjt:  --SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

A0A6P3Z5D3 pentatricopeptide repeat-containing protein At4g21065-like3.6e-2550Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRF----------YG---------------
        M  KGLVKP G  KIE+DG IH FA GDSGHPEAE IY K DEI  QL ++ Y+PK+ E+LLE+ D  K  +           YG               
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRF----------YG---------------

Query:  --SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
          SC +CH FMK+VSKT+  EIIM+DR  FHHFR
Subjt:  --SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

SwissProt top hitse value%identityAlignment
O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic1.3e-1636.3Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGD-----------NAKLLRFYG--------------
        M V GL K  G   IEIDG+IH F +GD+ HP +E +Y K  E+  +LK   YEP++ ++L  + +           + KL   YG              
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGD-----------NAKLLRFYG--------------

Query:  ---SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
            C +CH   KL+S+ Y  EII++DR+ FHHFR
Subjt:  ---SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

Q683I9 Pentatricopeptide repeat-containing protein At3g628908.9e-1330.6Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEV---------------------------GDNAKLLRF
        M VKG+ K  G   +E++GV+H F  GD    E+E IY   DEI  +L++  Y     E+LL++                           G   ++++ 
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEV---------------------------GDNAKLLRF

Query:  YGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
           C +CH  MK++SK +  EI+++D   FHHFR
Subjt:  YGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

Q9FG16 Pentatricopeptide repeat-containing protein At5g065404.9e-1134.38Show/hide
Query:  KPAGPRKIEIDGVIHGFAAG-DSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGD----------NAKLLRFYGS-----------------CEE
        KP G   IEIDG I+ F  G D  HPE   I RKW+EI  +++   Y+    +   +V +          + KL   YG                  CE+
Subjt:  KPAGPRKIEIDGVIHGFAAG-DSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGD----------NAKLLRFYGS-----------------CEE

Query:  CHKFMKLVSKTYPSEIIMKDRFCFHHFR
        CH   KL+S+ Y  E+I++DR  FHHFR
Subjt:  CHKFMKLVSKTYPSEIIMKDRFCFHHFR

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic2.2e-1132.06Show/hide
Query:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEV---------------------------GDNAKLLRFYGS
        KG+ K  G   IEID V+H F  GD  HP    IY   +E+   L++  + P   E+L E+                           G    +++    
Subjt:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEV---------------------------GDNAKLLRFYGS

Query:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
        C  CH+  KL+SK Y  EII +DR  FHHFR
Subjt:  CEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

Q9ZVF4 Pentatricopeptide repeat-containing protein At2g01510, mitochondrial4.4e-1230Show/hide
Query:  GLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEV---------------------------GDNAKLLRFYGSC
        G  K A    +E +G IH F  GD  HP++++IY K DEI  ++++  Y P    +  +V                           G   ++++   +C
Subjt:  GLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEV---------------------------GDNAKLLRFYGSC

Query:  EECHKFMKLVSKTYPSEIIMKDRFCFHHFR
        ++CH F K VS    +EIIM+D+  FHHFR
Subjt:  EECHKFMKLVSKTYPSEIIMKDRFCFHHFR

Arabidopsis top hitse value%identityAlignment
AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.5e-1836.3Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGD-----------NAKLLRFYG--------------
        M V GL K  G   IEIDG+IH F +GD+ HP +E +Y K  E+  +LK   YEP++ ++L  + +           + KL   YG              
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGD-----------NAKLLRFYG--------------

Query:  ---SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
            C +CH   KL+S+ Y  EII++DR+ FHHFR
Subjt:  ---SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein6.4e-1430.6Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEV---------------------------GDNAKLLRF
        M VKG+ K  G   +E++GV+H F  GD    E+E IY   DEI  +L++  Y     E+LL++                           G   ++++ 
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEV---------------------------GDNAKLLRF

Query:  YGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
           C +CH  MK++SK +  EI+++D   FHHFR
Subjt:  YGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-1328.36Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRF
        M+  G+ K  G   +E+   +H F  GD  HP++++IY K  E+  +L+ E Y P++  + ++V +  K                           +++ 
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRF

Query:  YGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
           C +CH  +KLVSK Y  EI+++DR  FHHF+
Subjt:  YGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

AT4G21065.2 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-1328.36Show/hide
Query:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRF
        M+  G+ K  G   +E+   +H F  GD  HP++++IY K  E+  +L+ E Y P++  + ++V +  K                           +++ 
Subjt:  MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAK---------------------------LLRF

Query:  YGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
           C +CH  +KLVSK Y  EI+++DR  FHHF+
Subjt:  YGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR

AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-1635.61Show/hide
Query:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGD-----------NAKLLRFYG-----------------
        +G+ K  G   I ++G  H F AGD  HPE E I  KW  +  +L++  Y P+L E+LL++ D           + KL   YG                 
Subjt:  KGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGD-----------NAKLLRFYG-----------------

Query:  SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR
         C++CHK  KL+SK Y  +I+M+DR  FHHFR
Subjt:  SCEECHKFMKLVSKTYPSEIIMKDRFCFHHFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTGAAAGGATTAGTAAAACCAGCAGGGCCTAGAAAGATAGAGATTGATGGGGTAATTCATGGATTTGCAGCAGGAGACTCAGGTCATCCTGAAGCAGAAAGCAT
CTATAGGAAATGGGATGAAATATATAGTCAACTAAAACAAGAAGCGTACGAACCAAAACTCCTGGAGATTTTGCTTGAAGTTGGCGATAATGCAAAATTGTTGAGATTTT
ATGGGTCCTGCGAGGAATGCCACAAGTTTATGAAACTGGTCTCGAAGACGTACCCAAGCGAGATCATAATGAAGGATAGATTCTGTTTCCACCATTTCCGACTTTCAGGA
ATGGTTACTGCTCATCCAAGGACCACTTGTAACAGGGAGATCCGTACAAGGTTGATTTTTTCCAGAGCAATACTAATGAGAACTGAGGAGCTTAAAACTGATGTGTTGTT
TGTTTTGCTTATAGTCGTTCAGGGTGGGTGGGACTATTCTTCTGTGAAGACACTCTACATTGTACAAACAAGAATTATTAAGGGCACTGCTGCACTCATATGCTCACATG
TCAAGCCATGGATTATGGAGAAAGGTTTCTTTACAGCCCACAGTCTGGTTTTGGAGATTCCCCTCCCCCACCATATGGCTCAAGATCTCATTCCAAACTTCTTTCACTCA
ACCACCCCCAAATCTGATGCTCTGACCATAGTTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGTGAAAGGATTAGTAAAACCAGCAGGGCCTAGAAAGATAGAGATTGATGGGGTAATTCATGGATTTGCAGCAGGAGACTCAGGTCATCCTGAAGCAGAAAGCAT
CTATAGGAAATGGGATGAAATATATAGTCAACTAAAACAAGAAGCGTACGAACCAAAACTCCTGGAGATTTTGCTTGAAGTTGGCGATAATGCAAAATTGTTGAGATTTT
ATGGGTCCTGCGAGGAATGCCACAAGTTTATGAAACTGGTCTCGAAGACGTACCCAAGCGAGATCATAATGAAGGATAGATTCTGTTTCCACCATTTCCGACTTTCAGGA
ATGGTTACTGCTCATCCAAGGACCACTTGTAACAGGGAGATCCGTACAAGGTTGATTTTTTCCAGAGCAATACTAATGAGAACTGAGGAGCTTAAAACTGATGTGTTGTT
TGTTTTGCTTATAGTCGTTCAGGGTGGGTGGGACTATTCTTCTGTGAAGACACTCTACATTGTACAAACAAGAATTATTAAGGGCACTGCTGCACTCATATGCTCACATG
TCAAGCCATGGATTATGGAGAAAGGTTTCTTTACAGCCCACAGTCTGGTTTTGGAGATTCCCCTCCCCCACCATATGGCTCAAGATCTCATTCCAAACTTCTTTCACTCA
ACCACCCCCAAATCTGATGCTCTGACCATAGTTCTGTAA
Protein sequenceShow/hide protein sequence
MIVKGLVKPAGPRKIEIDGVIHGFAAGDSGHPEAESIYRKWDEIYSQLKQEAYEPKLLEILLEVGDNAKLLRFYGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFRLSG
MVTAHPRTTCNREIRTRLIFSRAILMRTEELKTDVLFVLLIVVQGGWDYSSVKTLYIVQTRIIKGTAALICSHVKPWIMEKGFFTAHSLVLEIPLPHHMAQDLIPNFFHS
TTPKSDALTIVL