| GenBank top hits | e value | %identity | Alignment |
|---|
| AAM93462.1 putative reverse transcriptase [Oryza sativa Japonica Group] | 1.7e-37 | 33.44 | Show/hide |
Query: EGKRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSA-------
+ KR GK G+ AIKLDMSKAYDRVEW F+ +++++GF E W+ IM+C+ TV Y + VNG+ E KP++GLRQGDP+SPY+F+I AE FSA
Subjt: EGKRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSA-------
Query: ----LLIREESLNN-------------------------------------------------FKGLK----ALLAKASWRILKNPNSLISQMLRGK---
LL ES+ N F+ L A+LA+ WR+++NP+SL S++L+ K
Subjt: ----LLIREESLNN-------------------------------------------------FKGLK----ALLAKASWRILKNPNSLISQMLRGK---
Query: ------------------------DLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIID-DHGAWIEDKVRGSFSAIDAEVILNT
L KG+ W+VG+G HI I DPW+ + V + L RVCE+ID G W + ++ F+ DA++I
Subjt: ------------------------DLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIID-DHGAWIEDKVRGSFSAIDAEVILNT
Query: PVGGEGRRDEIIWNIKKEGL
P+ EG+ D I W +G+
Subjt: PVGGEGRRDEIIWNIKKEGL
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| GAU47878.1 hypothetical protein TSUD_404500 [Trifolium subterraneum] | 8.9e-34 | 31.49 | Show/hide |
Query: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREES--
K KG+ G +A+K+D+SKAYD+V+W F+R+VM +MGF++ W +M C+ +V YSVL+N + P +GLRQG P+SPY+F++V E AL+ +
Subjt: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREES--
Query: ------------------------------LNNFKGL-KALLAKASWRILKNPNSLISQMLR---------------------------GKDLFTKGIRW
NF+ KA++AK W I++NPNSL++++++ + + + G W
Subjt: ------------------------------LNNFKGL-KALLAKASWRILKNPNSLISQMLR---------------------------GKDLFTKGIRW
Query: KVGDGRHIMIDQDPWIALEGSE---VPSLTNEELRGKRVCEII-DDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEG
++G G +I + QDPW L GS+ V SL + V +++ +++ AW KVR FS AE IL TP+ R D+++W ++ G
Subjt: KVGDGRHIMIDQDPWIALEGSE---VPSLTNEELRGKRVCEII-DDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEG
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| KAA3477433.1 reverse transcriptase [Gossypium australe] | 3.1e-34 | 31.37 | Show/hide |
Query: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLN
KR K G +A+KLDMSKAYDRVEW F++ V+ QMGFAE+W +M C+ TV Y+V +N + F+P +GL+QGDP+SPY+FLI +EG SAL+ +
Subjt: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLN
Query: NFKGLKA------------------------------------------------------LLAKASWRILKNPNSLISQMLR-----------------
KG+KA LLAK WRI+ N NSL++++L+
Subjt: NFKGLKA------------------------------------------------------LLAKASWRILKNPNSLISQMLR-----------------
Query: ----------GKDLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIIDDH-GAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEII
KD KG+ W+VG G +I ID D WI + S + +R +ID++ W + ++ +F+ D E IL P+ + D +
Subjt: ----------GKDLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIIDDH-GAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEII
Query: WNIKKE
W + +
Subjt: WNIKKE
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| XP_024162452.1 uncharacterized protein LOC112169623 [Rosa chinensis] | 2.1e-35 | 31.27 | Show/hide |
Query: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESL-
KR+G+ G++A+ LD+SKAYDR+EW F+RK++ + GFA W +M C+ +V YS LV G+P+ P++GLRQGDP+SPY+FL+ AEGFS L +++ L
Subjt: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESL-
Query: -----------------------NNFKGLK------------ALLAKASWRILKNPNSLISQMLRG---------------------------KDLFTKG
F+ +K LL+ A+WR++ NP SL++Q+ + +D G
Subjt: -----------------------NNFKGLK------------ALLAKASWRILKNPNSLISQMLRG---------------------------KDLFTKG
Query: IRWKVGDGRHIMIDQDPWIALEGSEVP--SLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEGL
W+VG+G ++ + D WI + P +L ++ V E+I W E KVR F+ D E IL P+ D + W+ +++G+
Subjt: IRWKVGDGRHIMIDQDPWIALEGSEVP--SLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEGL
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| XP_024195622.1 uncharacterized protein LOC112198734 [Rosa chinensis] | 8.6e-37 | 33.33 | Show/hide |
Query: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLN
KR+G G +A+KLD+SKAYDR+E F+RKVM++ GFA W +M C+ +V +S L+ G+P+ P++GLRQGDP+SPY+FLI AEGFSALL +++ L
Subjt: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLN
Query: NFKGLKALL-----------------AKASWRILKNPNSLISQMLRGK---------------------------DLFTKGIRWKVGDGRHIMIDQDPWI
G++A L + +WRI+ P SLI+ + + K +L G W++G G + + D W+
Subjt: NFKGLKALL-----------------AKASWRILKNPNSLISQMLRGK---------------------------DLFTKGIRWKVGDGRHIMIDQDPWI
Query: ALEGSEVPSLTNEELRGK-RVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEG
+ VP +T ++ V E++ G W E++VR F+ ++A+ IL P+ D + W ++ G
Subjt: ALEGSEVPSLTNEELRGK-RVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2N9FNX2 Reverse transcriptase domain-containing protein | 3.0e-35 | 30 | Show/hide |
Query: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREE---
K KGK G +A+KLDMSKAYDRVEWVF+ VM+++GFAE+W IM C+ TV YSVL+NG F ++G+RQGD +SPY+FLI AEG S+LL R +
Subjt: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREE---
Query: ------------------------------------------------------------------------SLNN------------------------
LNN
Subjt: ------------------------------------------------------------------------SLNN------------------------
Query: ----------FKGLK----ALLAKASWRILKNPNSLISQMLRGK---------------------------DLFTKGIRWKVGDGRHIMIDQDPWIALEG
F+ LK ALLAK WRIL+ P SL++++ + K ++ G+RW +G+GR + I DPW+ L+
Subjt: ----------FKGLK----ALLAKASWRILKNPNSLISQMLRGK---------------------------DLFTKGIRWKVGDGRHIMIDQDPWIALEG
Query: S----EVPSLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEGL
S VP + + E + I DD+ W +KVR FS +A I++ P+ RRD + W+ K GL
Subjt: S----EVPSLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEGL
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| A0A2N9IVJ2 Uncharacterized protein | 3.9e-43 | 37.37 | Show/hide |
Query: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLN
K KGK G +A+KLDMSKAYDRVEWVF+ VM+++GFAE+W IM C+ TV YSVL+NG F ++G+RQGD +SPY+FLI EG S LL R +
Subjt: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLN
Query: NFKG---------LK-----------------------ALLAKASWRILKNPNSLISQMLRGK---------------------------DLFTKGIRWK
KG LK ALLAK WRIL+ P SL++++ + K ++ G+RW
Subjt: NFKG---------LK-----------------------ALLAKASWRILKNPNSLISQMLRGK---------------------------DLFTKGIRWK
Query: VGDGRHIMIDQDPWIALEGS----EVPSLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEGL
+G+GR + I DPW+ L+ S VP + + E + I DD+ W +KVR FS +A I++ P+ RRD + W+ K GL
Subjt: VGDGRHIMIDQDPWIALEGS----EVPSLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIWNIKKEGL
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| A0A803NJ60 Uncharacterized protein | 7.6e-39 | 38.94 | Show/hide |
Query: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLN
K G+ G A+KLDMSKA+DRVEW F++ VM++MGFA+ W+L IM C+ T +++ L+NGE S P KGLRQG P+SPY+FLI +EG LL EE L
Subjt: KRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLN
Query: NFKGLKALLAKASWRILKNPNSLISQMLRGKDLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDA
N G+ L G++L +RWK+G+GRHI DPWI + +P+ + V +I + W + + FS+ID
Subjt: NFKGLKALLAKASWRILKNPNSLISQMLRGKDLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDA
Query: EVILNTPVGGEGRRDEIIWNIKKEGL
E IL P+ D++IW+ G+
Subjt: EVILNTPVGGEGRRDEIIWNIKKEGL
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| A0A803NU77 Uncharacterized protein | 8.7e-35 | 31.05 | Show/hide |
Query: RKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLNN
++GK G+ AIKLDMSKA+DRVEW F++ +M +GF I CI +V +S L+N Q P++G+RQGDP+SPY+F+I AEG S LL EE+ N
Subjt: RKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLNN
Query: FKGLK-------------------------------------------------------ALLAKASWRILKNPNSLISQMLR-----------------
+GLK A+LAK +WR+ NP SL+S++L+
Subjt: FKGLK-------------------------------------------------------ALLAKASWRILKNPNSLISQMLR-----------------
Query: ----------GKDLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIW
GK+L KG+RWKVGDG I+ DPWI + P + ++V +I W + + +F D + IL P+ D++IW
Subjt: ----------GKDLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIIDDHGAWIEDKVRGSFSAIDAEVILNTPVGGEGRRDEIIW
Query: NIKKEG
+ + G
Subjt: NIKKEG
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| Q8LMV3 Putative reverse transcriptase | 8.4e-38 | 33.44 | Show/hide |
Query: EGKRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSA-------
+ KR GK G+ AIKLDMSKAYDRVEW F+ +++++GF E W+ IM+C+ TV Y + VNG+ E KP++GLRQGDP+SPY+F+I AE FSA
Subjt: EGKRKGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSA-------
Query: ----LLIREESLNN-------------------------------------------------FKGLK----ALLAKASWRILKNPNSLISQMLRGK---
LL ES+ N F+ L A+LA+ WR+++NP+SL S++L+ K
Subjt: ----LLIREESLNN-------------------------------------------------FKGLK----ALLAKASWRILKNPNSLISQMLRGK---
Query: ------------------------DLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIID-DHGAWIEDKVRGSFSAIDAEVILNT
L KG+ W+VG+G HI I DPW+ + V + L RVCE+ID G W + ++ F+ DA++I
Subjt: ------------------------DLFTKGIRWKVGDGRHIMIDQDPWIALEGSEVPSLTNEELRGKRVCEIID-DHGAWIEDKVRGSFSAIDAEVILNT
Query: PVGGEGRRDEIIWNIKKEGL
P+ EG+ D I W +G+
Subjt: PVGGEGRRDEIIWNIKKEGL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O00370 LINE-1 retrotransposable element ORF2 protein | 6.7e-08 | 27.66 | Show/hide |
Query: HIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCI-GTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLNNFKGLK
H+ I +D KA+D+++ F+ K + ++G + LKI+ I ++++NG+ E+F G RQG P+SP +F IV E + + +E+ + + K
Subjt: HIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCI-GTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLNNFKGLK
Query: -----ALLAKASWRILKNPNSLISQMLRGKDLFTKGIRWKV
+L A L+NP +L+ F+K +K+
Subjt: -----ALLAKASWRILKNPNSLISQMLRGKDLFTKGIRWKV
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| P08548 LINE-1 reverse transcriptase homolog | 7.4e-07 | 34.07 | Show/hide |
Query: HIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCI-GTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREE
H+ + +D KA+D ++ F+ + ++++G E LK+++ I ++++NG +SF G RQG P+SP +F IV E A+ IREE
Subjt: HIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCI-GTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREE
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| P11369 LINE-1 retrotransposable element ORF2 protein | 7.9e-09 | 25.69 | Show/hide |
Query: HIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLNNFKGLK-
H+ I LD KA+D+++ F+ KV+++ G + I ++ VNGE E+ G RQG P+SPY+F IV E + + +++ + + K
Subjt: HIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLNNFKGLK-
Query: ----ALLAKASWRILKNPNSLISQMLRGKDLFTKGIRWKVGDGR
+LLA + +P + ++L + F + + +K+ +
Subjt: ----ALLAKASWRILKNPNSLISQMLRGKDLFTKGIRWKVGDGR
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| P92555 Uncharacterized mitochondrial protein AtMg01250 | 2.1e-06 | 32.94 | Show/hide |
Query: LVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLNNFKGLKALLAKASWRILKNPNSLISQMLRGKDLFTKGIRW
++NG PQ P++GLRQGDP+SPY+F++ E S L R + G++ + N + I+ +L D T RW
Subjt: LVNGEPQESFKPNKGLRQGDPISPYIFLIVAEGFSALLIREESLNNFKGLKALLAKASWRILKNPNSLISQMLRGKDLFTKGIRW
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| Q05118 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) | 6.9e-05 | 30.59 | Show/hide |
Query: KGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAE
KGK ++ + LD+ KA+D V + + M+ G + IM I +++V G G++QGDP+SP +F IV +
Subjt: KGKAGHIAIKLDMSKAYDRVEWVFVRKVMQQMGFAEDWSLKIMDCIGTVEYSVLVNGEPQESFKPNKGLRQGDPISPYIFLIVAE
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