CuGenDBv2

Gene ID	Lag0009273
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DUF3414 domain-containing protein
Genome location	chr9:37570637..37572936
RNA-Seq Expression	Lag0009273
Synteny	Lag0009273
Gene Ontology terms	GO:0006913 - nucleocytoplasmic transport (biological process) GO:0015031 - protein transport (biological process) GO:0005643 - nuclear pore (cellular component) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR044840 - Nucleoporin Nup188

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605000.1 Nucleoporin 188-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-55

87.5

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSAELPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDS E+KIG+HTLSIQ ELK KALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMV
        QSYILAERTTEH+N+ +NSPFQELLH+V
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMV

TYJ99584.1 DUF3414 domain-containing protein [Cucumis melo var. makuwa]

2.0e-55

85.61

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA+STSVDSSLWWDPF   LTELENVSLSS ELPP LMKK+DDNHAWF+ TVSLFKKPNEKSRVALDSQEVKIG+HTLSIQPELKAKALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMVSSLF
        QSYILA RT EH+NV  NSPF+ELLHMV S F
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMVSSLF

XP_022947489.1 uncharacterized protein LOC111451342 [Cucurbita moschata]

1.5e-55

87.5

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSAELPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQE+KIG+HTLSIQ ELK KALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMV
        QSYILAERT EH+N+ +NSPFQELLH+V
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMV

XP_023533343.1 uncharacterized protein LOC111795266 [Cucurbita pepo subsp. pepo]

2.6e-55

87.5

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSAELPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQ +KIG+HTLSIQ ELK KALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMV
        QSYILAERTTEH+N+ +NSPFQELLH+V
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMV

XP_038902764.1 uncharacterized protein LOC120089385 isoform X1 [Benincasa hispida]

1.5e-55

89.84

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MATSTSVDSSLWWDPF  LLTELENVSLSSAELPPKLMKK+DDNHAWF+DTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELK KALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMV
        QSYILA RT  HDNV  NS FQEL HMV
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C7B7 uncharacterized protein LOC103497512

1.4e-54

86.72

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA+STSVDSSLWWDPF   LTELENVSLSS ELPP LMKK+DDNHAWF+ TVSLFKKPNEKSRVALDSQEVKIG+HTLSIQPELKAKALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMV
        QSYILA RT EH+NV  NSPF+ELLHMV
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMV

A0A5A7TWR3 Nucleoporin NUP188-like protein

1.4e-54

86.72

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA+STSVDSSLWWDPF   LTELENVSLSS ELPP LMKK+DDNHAWF+ TVSLFKKPNEKSRVALDSQEVKIG+HTLSIQPELKAKALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMV
        QSYILA RT EH+NV  NSPF+ELLHMV
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMV

A0A5D3BKP2 DUF3414 domain-containing protein

9.6e-56

85.61

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA+STSVDSSLWWDPF   LTELENVSLSS ELPP LMKK+DDNHAWF+ TVSLFKKPNEKSRVALDSQEVKIG+HTLSIQPELKAKALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMVSSLF
        QSYILA RT EH+NV  NSPF+ELLHMV S F
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMVSSLF

A0A6J1G6Y8 uncharacterized protein LOC111451342

7.4e-56

87.5

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSAELPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQE+KIG+HTLSIQ ELK KALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMV
        QSYILAERT EH+N+ +NSPFQELLH+V
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMV

A0A6J1I6R8 uncharacterized protein LOC111469682

3.7e-55

87.5

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSAELPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQE+KIGSH LSIQ ELK KALKLS YLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQELLHMV
        QSYILAERTTEH+N+ +NS FQELLH+V
Subjt:  QSYILAERTTEHDNVDNNSPFQELLHMV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38760.1 Protein of unknown function (DUF3414)

1.1e-32

58.06

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV
        MA   SVDSSLWWDPF  LLT+LEN SLS  +LP  + KKL++NHAWF+ T+S+FK P+EKS+ AL+S  VKI  H L I+P+LK KAL++S +L LDE+
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEV

Query:  QSYILAERTTEHDNVDNNSPFQEL
        QSYIL ER+ E +    +S  QEL
Subjt:  QSYILAERTTEHDNVDNNSPFQEL

Sequences

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CDS sequence

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ATGGTAGATTGTCCCATTAGGTTACAGCTTGGTTCCTCCTTGTTTCCCATCTTTCCAAGCAAGCGTGCAATTGATTCTTGTGGTGAGAGGACGGTGGTTGACTCCGCCTC
TTTTTCCAACCGAAGATGGATCTCCTCCCTCATTGGTCGAGACTCTCTTGGTCGTCATAGTGGAAGCGTCCAAAAATCGTACCGCGAAAGCCGAAAAAGCACTATTAGTT
CATCTCTTCTTGAGCAGCTCTGTGCCAATTGCTTAAGCCCTCTGAAAACCCAGAGGCGCGAAAAAGAGAGAATTACACAGCCATTTCTGTTTTCCTTGCTAGGGTTCAGC
TTCGAAGCTCTCACTGGGACTTCTCGCATGGCCACGTCCACTTCCGTCGACTCCTCTCTCTGGTGGGATCCTTTCTGTCTGCTTCTAACCGAGCTCGAAAATGTCTCCCT
CTCTTCTGCAGAGCTTCCTCCGAAACTGATGAAAAAGTTGGATGACAACCATGCGTGGTTCTTGGATACCGTTTCACTCTTCAAGAAACCGAACGAGAAATCGAGGGTGG
CTTTAGATTCTCAGGAAGTCAAGATAGGATCCCACACACTATCTATACAACCTGAACTAAAAGCTAAAGCTCTCAAGTTGAGCTACTATCTGTGTTTGGATGAGGTGCAA
TCATATATTTTGGCTGAAAGAACCACCGAGCACGATAATGTAGATAACAATTCCCCATTTCAGGAACTTCTTCACATGGTTAGTAGCTTGTTCCATTAA

mRNA sequence

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Protein sequence

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MVDCPIRLQLGSSLFPIFPSKRAIDSCGERTVVDSASFSNRRWISSLIGRDSLGRHSGSVQKSYRESRKSTISSSLLEQLCANCLSPLKTQRREKERITQPFLFSLLGFS
FEALTGTSRMATSTSVDSSLWWDPFCLLLTELENVSLSSAELPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSYYLCLDEVQ
SYILAERTTEHDNVDNNSPFQELLHMVSSLFH

Lag0009273 (gene) of Sponge gourd (AG-4) v1 genome