CuGenDBv2

Gene ID	Lag0009275
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Nucleoporin NUP188-like protein
Genome location	chr9:37625508..37626938
RNA-Seq Expression	Lag0009275
Synteny	Lag0009275
Gene Ontology terms	GO:0006405 - RNA export from nucleus (biological process) GO:0006606 - protein import into nucleus (biological process) GO:0044611 - nuclear pore inner ring (cellular component) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605000.1 Nucleoporin 188-like protein, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-28

95.83

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVAI+NMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

KAG7035034.1 Nucleoporin-like protein [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-28

95.83

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVAI+NMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

XP_022947489.1 uncharacterized protein LOC111451342 [Cucurbita moschata]

2.4e-28

95.83

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVAI+NMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

XP_022970819.1 uncharacterized protein LOC111469682 [Cucurbita maxima]

4.0e-28

94.44

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CI+LKKSVW+EDLFVAI+NMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

XP_023533343.1 uncharacterized protein LOC111795266 [Cucurbita pepo subsp. pepo]

1.1e-28

69.57

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQLNVGWLPYLWACAEKVIPWWSMCGFVQL
        RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVAI+NMLTSAALYQ    +L  L A  E +    +  G V  
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQLNVGWLPYLWACAEKVIPWWSMCGFVQL

Query:  VNQDHHECSLPTLQG
         +++    SLPT  G
Subjt:  VNQDHHECSLPTLQG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TU95 Nucleoporin NUP188-like protein

1.5e-25

90.28

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQVGAARVLSML  ITDDLQPHLSSACFSLDDEQI +LR SIECILLKKSV NEDLFVA+VNMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

A0A6J1CY20 uncharacterized protein LOC111015501 isoform X2

1.4e-26

88.89

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQ+GAARVLSMLLLIT+DLQPHLSSACF+LDDEQI DLR SIECI LKKSVW+EDLFVA+VNMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

A0A6J1CZ16 uncharacterized protein LOC111015501 isoform X1

1.4e-26

88.89

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQ+GAARVLSMLLLIT+DLQPHLSSACF+LDDEQI DLR SIECI LKKSVW+EDLFVA+VNMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

A0A6J1G6Y8 uncharacterized protein LOC111451342

1.1e-28

95.83

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVAI+NMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

A0A6J1I6R8 uncharacterized protein LOC111469682

2.0e-28

94.44

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Query:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CI+LKKSVW+EDLFVAI+NMLTSAALYQ
Subjt:  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38760.1 Protein of unknown function (DUF3414)

6.5e-08

47.22

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Query:  VQVGAARVLSMLLLITDDLQPH-LSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ
        +QV AA+VLS L  + +  Q + +S+A F LD++QITDLR+S+  I+L  S  NE L VA + +LT AA +Q
Subjt:  VQVGAARVLSMLLLITDDLQPH-LSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQ

Sequences

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CDS sequence

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ATGCCGACTTCAAGCGTGCAGGAGCAGAGAGTACAAGTCGGTGCAGCAAGGGTACTATCTATGTTATTGTTAATCACAGACGATTTGCAACCTCATTTGTCTAGT
GCATGCTTTAGTCTTGACGATGAGCAGATCACAGATTTGAGGCATTCAATTGAGTGCATACTTCTTAAGAAATCTGTGTGGAACGAAGATCTCTTTGTTGCTATA
GTTAACATGTTGACTTCAGCAGCACTTTATCAGCTTAACGTGGGTTGGCTTCCATATCTTTGGGCTTGTGCAGAGAAGGTGATACCTTGGTGGTCAATGTGTGGT
TTTGTTCAATTAGTGAATCAAGATCATCATGAGTGTTCACTACCCACCTTGCAAGGGTCTACTGCAGGCGCTTAA

mRNA sequence

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Protein sequence

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MPTSSVQEQRVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQLNVGWLPYLWACAEKVIPWWSMCG
FVQLVNQDHHECSLPTLQGSTAGA

Lag0009275 (gene) of Sponge gourd (AG-4) v1 genome