CuGenDBv2

Gene ID	Lag0009398
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr9:38851677..38852168
RNA-Seq Expression	Lag0009398
Synteny	Lag0009398
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_019170410.1 PREDICTED: uncharacterized protein LOC109165884 [Ipomoea nil]

2.1e-34

46.58

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        + ++ F D W++ +M C+STVSYS++INGS  +   P+RGLRQGDPLSPYLF+  AEG S LLK+ E   +I G ++ +  P +THLFF DDSL+F K+ 
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM
         ++    KR L  YE  SGQ +N   S+   SKN S+E R E   IL + +  + G YLG+
Subjt:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]

7.3e-35

46.91

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        M  M F++ W++ IM+C+ +V ++++ING P D F P+RGLRQGDPLSPYLF+  AEG SAL+  EE   NI   +IN+ CP ++HLF+ DD L+F K+ 
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEA-SGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM
          +  + K IL+ YE+A SGQ INL+ S F+ SKN  ++      + L +  T+SLG YLG+
Subjt:  GKDLHTFKRILKWYEEA-SGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM

XP_024156142.1 uncharacterized protein LOC112164137 [Rosa chinensis]

1.1e-33

45.4

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        MRSM F   WI  IM C++TVSYS ++NG P     P+RGLRQGD +SPYLFL  AEG S +L  EE    + G  I    P + HLFF DDS +F+K++
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGMST
         ++    K ILKWYE+ASGQ +N + S    SKN+    + E   +  +E+ D    YLG+ T
Subjt:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGMST

XP_024172304.2 uncharacterized protein LOC112178381 [Rosa chinensis]

8.1e-34

45.4

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        MRSM F   WI+ IM C++TVSYS ++NG P     P+RGLRQGD +SPYLFL  AEG S +L  EE    + G  I    P + HLFF DDS +F+K++
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGMST
         ++    K ILKWYE+ASGQ +N + S    SKN+    + E   +  +E+ D    YLG+ T
Subjt:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGMST

XP_027185015.1 uncharacterized protein LOC113783152 [Coffea eugenioides]

4.8e-34

48.47

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        M  M F + WI  IM CISTVS+S  ING   ++  P RG+RQGDPLSPYLFL  +EGFS+LLKR     N+ G +I+++ P +THLFF DDSLIF K+ 
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNE-CERILRIEKTDSLGHYLGMS
         ++    KRIL+ YE+ SGQ +NL+ SS   SKN++   + + C  +  I+   S G YLG++
Subjt:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNE-CERILRIEKTDSLGHYLGMS

TrEMBL top hits

e value

%identity

Alignment

A0A2N9GDB5 Reverse transcriptase domain-containing protein

3.0e-34

45.34

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        M  M F + W+  +M CISTVSYSI++NG PH + KPSRGLRQGDPLSPYLFL  AEG  +L+++E++   + G  I++  P +THLFF DDSL+F K+ 
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM
          D+   + IL  YE+ASGQ IN + ++   SK+   +A+   + +L +        YLG+
Subjt:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM

A0A2N9GI95 Reverse transcriptase domain-containing protein

7.9e-35

47.83

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        M  M FS  W+  +M CISTVSYSI++NG PH F KPSRGLRQGDPLSPYLFL  AEGF +LL++E+    + G  I++  P +THLFF DDSL+F K+ 
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM
          D+   + IL  YE ASGQ IN + ++   SK+  + A+   + +L +        YLG+
Subjt:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM

A0A6J1DUG8 uncharacterized protein LOC111024135

3.6e-35

46.91

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        M  M F++ W++ IM+C+ +V ++++ING P D F P+RGLRQGDPLSPYLF+  AEG SAL+  EE   NI   +IN+ CP ++HLF+ DD L+F K+ 
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEA-SGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM
          +  + K IL+ YE+A SGQ INL+ S F+ SKN  ++      + L +  T+SLG YLG+
Subjt:  GKDLHTFKRILKWYEEA-SGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM

A0A6P6USW2 uncharacterized protein LOC113713943

5.1e-34

49.07

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        MR M F+D W   IM CIST SYS ++NG   ++  P RG+RQGDPLSPYLFL  +EGFS LL++  S   I G  I++  P LTHLFF DDSLIF K+ 
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM
         ++    KR+L  YE  +GQ INLE SS + S N+ +E + E  + L      S G YLG+
Subjt:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM

A0A6P6X3M6 uncharacterized protein LOC113739314

5.1e-34

49.07

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Query:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK
        MR M F+D W   IM CIST SYS ++NG   ++  P RG+RQGDPLSPYLFL  +EGFS LL++  S   I G  I++  P LTHLFF DDSLIF K+ 
Subjt:  MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSK

Query:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM
         ++    KR+L  YE  +GQ INLE SS + S N+ +E + E  + L      S G YLG+
Subjt:  GKDLHTFKRILKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGM

SwissProt top hits

e value

%identity

Alignment

P11369 LINE-1 retrotransposable element ORF2 protein

1.1e-04

25.32

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Query:  WIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSKGKDLHTFKR
        ++  I +  S    +I +NG   +      G RQG PLSPYLF    E  +  +++++    I G QI K    ++ L   DD ++++            
Subjt:  WIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSKGKDLHTFKR

Query:  ILKWYEEASGQTINLENS-SFMASKNLSKEARNECERILRIEKTDSLGHYLGMS
        ++  + E  G  IN   S +F+ +KN  K+A  E           +   YLG++
Subjt:  ILKWYEEASGQTINLENS-SFMASKNLSKEARNECERILRIEKTDSLGHYLGMS

P92555 Uncharacterized mitochondrial protein AtMg01250

9.1e-12

45.59

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Query:  MINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDS
        +ING+P     PSRGLRQGDPLSPYLF+   E  S L +R +    + G +++   P + HL F DD+
Subjt:  MINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDS

Arabidopsis top hits

e value

%identity

Alignment

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)

6.4e-13

45.59

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Query:  MINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDS
        +ING+P     PSRGLRQGDPLSPYLF+   E  S L +R +    + G +++   P + HL F DD+
Subjt:  MINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDS

Sequences

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CDS sequence

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ATGAGAAGTATGACCTTCAGCGATAATTGGATTGAAAGAATAATGAGTTGCATATCCACTGTGAGCTACTCCATCATGATTAATGGCTCACCCCATGACTTTTTCAAGCC
TAGTAGGGGTCTAAGACAAGGAGATCCGCTTTCTCCTTATCTCTTCCTGCGTCACGCGGAAGGCTTCTCAGCGCTCCTAAAAAGGGAGGAATCTCTATCTAATATTGTTG
GTTTCCAGATTAATAAATATTGCCCACTGTTGACTCACCTTTTCTTTGTAGATGACAGCTTGATATTTGTTAAATCTAAAGGAAAGGACTTGCACACTTTCAAAAGAATC
CTAAAGTGGTACGAGGAAGCTTCGGGCCAAACTATCAATTTGGAGAATTCGTCCTTCATGGCTAGCAAGAATCTAAGTAAGGAAGCTAGGAATGAGTGCGAGAGAATCCT
GAGGATAGAGAAAACCGATTCGCTAGGCCACTATTTGGGAATGTCGACTTAA

mRNA sequence

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Protein sequence

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MRSMTFSDNWIERIMSCISTVSYSIMINGSPHDFFKPSRGLRQGDPLSPYLFLRHAEGFSALLKREESLSNIVGFQINKYCPLLTHLFFVDDSLIFVKSKGKDLHTFKRI
LKWYEEASGQTINLENSSFMASKNLSKEARNECERILRIEKTDSLGHYLGMST

Lag0009398 (gene) of Sponge gourd (AG-4) v1 genome