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Lag0009409 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0009409
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontranscription termination factor MTERF6, chloroplastic/mitochondrial
Genome locationchr9:39004316..39004653
RNA-Seq ExpressionLag0009409
SyntenyLag0009409
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX98953.1 Mitochondrial transcription termination factor family protein [Theobroma cacao]1.7e-1651.38Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG
        +VS+ PKILT+ LN KLVPMVECL T G+  +                                +PEKQLGKMILLNPRLISYSI  +LTEIVDFLA  G
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG

Query:  LDKEGMVGK
        L +EGM+GK
Subjt:  LDKEGMVGK

XP_006486552.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Citrus sinensis]1.3e-1651.38Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG
        +VSK PKILT+ LN KLVPMVECL T G+  Y                                +PEKQLG+MILLNPRLISYSI  +LTE VDFLA  G
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG

Query:  LDKEGMVGK
        L +EGM+GK
Subjt:  LDKEGMVGK

XP_021301114.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Herrania umbratica]5.7e-1752.29Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRGS----IGY----------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG
        +VS+ PKILT+ LN KLVPMVECL T G+    + Y                            +PEKQLGKMILLNPRLISYSI  +LTEIVDFLA  G
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRGS----IGY----------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG

Query:  LDKEGMVGK
        L +EGM+GK
Subjt:  LDKEGMVGK

XP_021636168.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Hevea brasiliensis]3.3e-1750.91Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF
        ++SK PKILT+ LN KL+PMVECL T                                   ++G +PEKQLGK+ILLNPRLISYSI P+LTEIVDFLAG 
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF

Query:  GLDKEGMVGK
        GL+K+GM+GK
Subjt:  GLDKEGMVGK

XP_031744171.1 LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus]6.1e-1955.05Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG
        M SKYPKILTICLNG LV MVECL T GS  +                                IPEK LGKMILLNPRLI YSIVP+LTEIVDF A FG
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG

Query:  LDKEGMVGK
        LDK+G++ K
Subjt:  LDKEGMVGK

TrEMBL top hitse value%identityAlignment
A0A061E9I9 Mitochondrial transcription termination factor family protein8.0e-1751.38Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG
        +VS+ PKILT+ LN KLVPMVECL T G+  +                                +PEKQLGKMILLNPRLISYSI  +LTEIVDFLA  G
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG

Query:  LDKEGMVGK
        L +EGM+GK
Subjt:  LDKEGMVGK

A0A067FQJ4 Uncharacterized protein1.8e-1650.46Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG
        +VSK PKILT+ LN KLVPMVECL T G+  Y                                +PEKQLG+MILLNPRLISYSI  +LTE VDFL   G
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG

Query:  LDKEGMVGK
        L +EGM+GK
Subjt:  LDKEGMVGK

A0A2P2KU61 Uncharacterized protein LOC105137001 isoform X12.8e-1752.29Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG
        +VSK PKILT+ LN KL+PMVECLTT G+  +                                IPEKQLGK+ILLNPRLISY I  +LTEIVDFL G G
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRGSIGY--------------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG

Query:  LDKEGMVGK
        L K+GMVGK
Subjt:  LDKEGMVGK

A0A6A6MLL1 Uncharacterized protein1.6e-1750.91Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF
        ++SK PKILT+ LN KL+PMVECL T                                   ++G +PEKQLGK+ILLNPRLISYSI P+LTEIVDFLAG 
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF

Query:  GLDKEGMVGK
        GL+K+GM+GK
Subjt:  GLDKEGMVGK

A0A6J1BSC3 transcription termination factor MTERF6, chloroplastic/mitochondrial2.8e-1752.29Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRGS----IGY----------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG
        +VS+ PKILT+ LN KLVPMVECL T G+    + Y                            +PEKQLGKMILLNPRLISYSI  +LTEIVDFLA  G
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRGS----IGY----------------------------IPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFG

Query:  LDKEGMVGK
        L +EGM+GK
Subjt:  LDKEGMVGK

SwissProt top hitse value%identityAlignment
Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial1.5e-1544.55Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF
        +VS+ PKILT+ L+ +L+PMVECL++ G                                 ++G +PE QLGKMIL NPRLISYSI  +LT IV FLA  
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF

Query:  GLDKEGMVGK
        GLD++GM+GK
Subjt:  GLDKEGMVGK

Arabidopsis top hitse value%identityAlignment
AT4G38160.1 Mitochondrial transcription termination factor family protein1.0e-1644.55Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF
        +VS+ PKILT+ L+ +L+PMVECL++ G                                 ++G +PE QLGKMIL NPRLISYSI  +LT IV FLA  
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF

Query:  GLDKEGMVGK
        GLD++GM+GK
Subjt:  GLDKEGMVGK

AT4G38160.2 Mitochondrial transcription termination factor family protein1.0e-1644.55Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF
        +VS+ PKILT+ L+ +L+PMVECL++ G                                 ++G +PE QLGKMIL NPRLISYSI  +LT IV FLA  
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF

Query:  GLDKEGMVGK
        GLD++GM+GK
Subjt:  GLDKEGMVGK

AT4G38160.3 Mitochondrial transcription termination factor family protein1.0e-1644.55Show/hide
Query:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF
        +VS+ PKILT+ L+ +L+PMVECL++ G                                 ++G +PE QLGKMIL NPRLISYSI  +LT IV FLA  
Subjt:  MVSKYPKILTICLNGKLVPMVECLTTRG---------------------------------SIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGF

Query:  GLDKEGMVGK
        GLD++GM+GK
Subjt:  GLDKEGMVGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCCAAGTACCCCAAAATTCTTACTATTTGTCTGAATGGGAAGCTTGTTCCCATGGTCGAGTGCCTTACAACTCGGGGAAGCATTGGATATATACCTGAGAAGCA
GCTTGGGAAGATGATTTTGCTCAATCCTAGGCTCATTAGCTACAGCATTGTGCCGGAGCTTACTGAAATTGTGGACTTTCTTGCTGGTTTTGGCCTTGATAAGGAAGGGA
TGGTTGGCAAGTTTTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCCAAGTACCCCAAAATTCTTACTATTTGTCTGAATGGGAAGCTTGTTCCCATGGTCGAGTGCCTTACAACTCGGGGAAGCATTGGATATATACCTGAGAAGCA
GCTTGGGAAGATGATTTTGCTCAATCCTAGGCTCATTAGCTACAGCATTGTGCCGGAGCTTACTGAAATTGTGGACTTTCTTGCTGGTTTTGGCCTTGATAAGGAAGGGA
TGGTTGGCAAGTTTTGGTAA
Protein sequenceShow/hide protein sequence
MVSKYPKILTICLNGKLVPMVECLTTRGSIGYIPEKQLGKMILLNPRLISYSIVPELTEIVDFLAGFGLDKEGMVGKFW