; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0009474 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0009474
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:39531513..39532860
RNA-Seq ExpressionLag0009474
SyntenyLag0009474
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015388431.1 uncharacterized protein LOC107178124 [Citrus sinensis]6.0e-1334.23Show/hide
Query:  AWIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAK--EIEVEADALDLIRCLNNQEENLT
        +W PP +  +K N DA+ N +K+I GLG V+R++ G++V A +  S+    +  +EA AM  GL+    + G+A    + VE D+ ++   +NN++ ++T
Subjt:  AWIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAK--EIEVEADALDLIRCLNNQEENLT

Query:  EIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIARAGAFHSCAPVFC
        EI  +V AI +L      +  +H PRS N +AHS+ +  A   C  V C
Subjt:  EIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIARAGAFHSCAPVFC

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.0e-1635.82Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK
        W PP S  WK N++A+W A+   GG+GW++RD  G ++ A  +  R E +I  LE  A+ EGL++  +     + I +E+D+L+ I  L+ Q ++ TEI 
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK

Query:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
         ++E I  +   + ++S +H  R  N VAH +AR
Subjt:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]3.5e-1337.5Show/hide
Query:  VAWIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTE
        V W PP    WK N DA+W      GGLGW+VRDS G  + A+                   + L   L L    K IE+E+D L+++  +N     LTE
Subjt:  VAWIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTE

Query:  IKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
        +  IVE I      L +  FKH P   NGVAH IAR
Subjt:  IKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.7e-1334.33Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK
        W PP    W  N+DASW+     GG+GW++R   G +V A  +      ++ +LEA A+ EGL++ L  +G  + + +E D+ ++   LN + E+LT+  
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK

Query:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
         +VE I  L     +L+F    R  NG AHS+A+
Subjt:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.0e-1735.71Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVL------VLVGDAKEIEVEADALDLIRCLNNQEE
        W PP S  WK N+DA+W A+   GG+GW++RD  G ++ AD +  R E +I  LE  A+ EGL+++       +     + I +E+D+L+ I  L+ Q +
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVL------VLVGDAKEIEVEADALDLIRCLNNQEE

Query:  NLTEIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
        + TEI  ++E I  +   + ++S +H  R  N VAH +AR
Subjt:  NLTEIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.6e-1735.82Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK
        W PP S  WK N++A+W A+   GG+GW++RD  G ++ A  +  R E +I  LE  A+ EGL++  +     + I +E+D+L+ I  L+ Q ++ TEI 
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK

Query:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
         ++E I  +   + ++S +H  R  N VAH +AR
Subjt:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

A0A6J1D4B6 uncharacterized protein LOC1110171811.7e-1337.5Show/hide
Query:  VAWIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTE
        V W PP    WK N DA+W      GGLGW+VRDS G  + A+                   + L   L L    K IE+E+D L+++  +N     LTE
Subjt:  VAWIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTE

Query:  IKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
        +  IVE I      L +  FKH P   NGVAH IAR
Subjt:  IKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

A0A6J1D5W1 uncharacterized protein LOC1110173297.1e-1231.78Show/hide
Query:  WKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIKCIVEAINT
        WK N+DA+W+A + +GGLGW++R+    +  A  QT      I  LE  A+W G+++  V+   +  + +E+++L+ I  +   ++N+TEI  +V+ I  
Subjt:  WKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIKCIVEAINT

Query:  LAPKLGVLSFKHCPRSQNGVAHSIARAGA
           +  +  F+H  R  N VA  IA   A
Subjt:  LAPKLGVLSFKHCPRSQNGVAHSIARAGA

A0A6J1DNV9 uncharacterized protein LOC1110224031.3e-1334.33Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK
        W PP    W  N+DASW+     GG+GW++R   G +V A  +      ++ +LEA A+ EGL++ L  +G  + + +E D+ ++   LN + E+LT+  
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK

Query:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
         +VE I  L     +L+F    R  NG AHS+A+
Subjt:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

A0A6J1DSV1 uncharacterized protein LOC1110236081.9e-1735.71Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVL------VLVGDAKEIEVEADALDLIRCLNNQEE
        W PP S  WK N+DA+W A+   GG+GW++RD  G ++ AD +  R E +I  LE  A+ EGL+++       +     + I +E+D+L+ I  L+ Q +
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVL------VLVGDAKEIEVEADALDLIRCLNNQEE

Query:  NLTEIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
        + TEI  ++E I  +   + ++S +H  R  N VAH +AR
Subjt:  NLTEIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein3.2e-0424.49Show/hide
Query:  SPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIKCIVEA
        S R K N DAS +    + GLGW++R+S G+++   +   +G  + +  E  A+   +++     G  K I  E D  ++ R +N + +N   +K  ++ 
Subjt:  SPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIKCIVEA

Query:  INTLAPKLGVLSFKHCPRSQNGVAHSIARAG-------AFHSCAPVF
        I +  P      F    R QN  A ++ +         +  +C P F
Subjt:  INTLAPKLGVLSFKHCPRSQNGVAHSIARAG-------AFHSCAPVF

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.4e-0631.65Show/hide
Query:  VAWIPPNSPRWKFNSDASWNAEKKIGGLGWVVR-DSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVG--DAKEIEVEADALDLIRCLNNQEEN
        V W  P     K N+DA+W  E    G+GW++R +SGG L        R +   +VLEA+   E L+  ++ +   + K I  E+DA  L+  LN+ ++ 
Subjt:  VAWIPPNSPRWKFNSDASWNAEKKIGGLGWVVR-DSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVG--DAKEIEVEADALDLIRCLNNQEEN

Query:  LTEIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
           ++  +E I  L      + F+  PR  N VA  IAR
Subjt:  LTEIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.2e-0423.88Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK
        W  P +   K N D S +A ++  GL W++R+S G+ +       +G  +I   E  A+   ++    L    + +E E D + + R + N+E N   ++
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK

Query:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
          +E I   +     + F    R QN     +A+
Subjt:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

AT4G29090.1 Ribonuclease H-like superfamily protein3.4e-0627.61Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK
        W PP     K N+DA+WN + +  G+GWV+R+  G +     +      S+   E +AM   + S+         +  E+D+  LI  LNN +E    +K
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK

Query:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR
          ++ +  L  +   + F   PR  N +A  +AR
Subjt:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIAR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-0824.16Show/hide
Query:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK
        W PP   + K N DAS +    + GLGW++R+S G+++   +   +G  + +  E   +   +++        K++  E D   + R +N +  N   ++
Subjt:  WIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDLIRCLNNQEENLTEIK

Query:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIARA--------GAFHSC
          ++ I +  P    + F    R QNG A  +A+           FHSC
Subjt:  CIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIARA--------GAFHSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATGTCTCCTCACCCAATTTCAGGTTCATGGTTTTTGTCCAAGATTCCCAGTAGCTTGGATCCCTCCTAACTCCCCTCGATGGAAGTTCAATTCAGACGCG
TCCTGGAATGCGGAGAAGAAGATCGGAGGGTTGGGGTGGGTAGTTCGTGATTCCGGCGGTTCTTTGGTCTGTGCGGACTTGCAGACATCTAGAGGGGAGTGGTCG
ATCGATGTTCTTGAGGCCAAAGCCATGTGGGAAGGACTTAAGTCTGTGCTTGTCTTGGTCGGGGATGCGAAAGAAATTGAAGTAGAAGCGGATGCTCTTGATCTC
ATCCGCTGTTTGAACAATCAAGAGGAAAATTTGACAGAGATCAAGTGTATTGTTGAAGCCATTAACACTTTGGCTCCCAAGCTTGGAGTGCTCTCCTTCAAGCAT
TGCCCTAGAAGTCAGAATGGGGTGGCTCACTCCATCGCTCGTGCAGGCGCTTTTCATTCTTGTGCTCCTGTTTTTTGTAATTCTGATTCTTTTGTTGGGGATCAG
AGGAATCCTTCCACGCTGGAAGACAGTTATTGTTTTTGGTCCTCTGATCCTCCAGAGTGGTTATCCTCCTTGATTTCTAAGGAGTTGGTTGAACTTGATTCTTCT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGACATGTCTCCTCACCCAATTTCAGGTTCATGGTTTTTGTCCAAGATTCCCAGTAGCTTGGATCCCTCCTAACTCCCCTCGATGGAAGTTCAATTCAGACGCG
TCCTGGAATGCGGAGAAGAAGATCGGAGGGTTGGGGTGGGTAGTTCGTGATTCCGGCGGTTCTTTGGTCTGTGCGGACTTGCAGACATCTAGAGGGGAGTGGTCG
ATCGATGTTCTTGAGGCCAAAGCCATGTGGGAAGGACTTAAGTCTGTGCTTGTCTTGGTCGGGGATGCGAAAGAAATTGAAGTAGAAGCGGATGCTCTTGATCTC
ATCCGCTGTTTGAACAATCAAGAGGAAAATTTGACAGAGATCAAGTGTATTGTTGAAGCCATTAACACTTTGGCTCCCAAGCTTGGAGTGCTCTCCTTCAAGCAT
TGCCCTAGAAGTCAGAATGGGGTGGCTCACTCCATCGCTCGTGCAGGCGCTTTTCATTCTTGTGCTCCTGTTTTTTGTAATTCTGATTCTTTTGTTGGGGATCAG
AGGAATCCTTCCACGCTGGAAGACAGTTATTGTTTTTGGTCCTCTGATCCTCCAGAGTGGTTATCCTCCTTGATTTCTAAGGAGTTGGTTGAACTTGATTCTTCT
TAA
Protein sequenceShow/hide protein sequence
MTCLLTQFQVHGFCPRFPVAWIPPNSPRWKFNSDASWNAEKKIGGLGWVVRDSGGSLVCADLQTSRGEWSIDVLEAKAMWEGLKSVLVLVGDAKEIEVEADALDL
IRCLNNQEENLTEIKCIVEAINTLAPKLGVLSFKHCPRSQNGVAHSIARAGAFHSCAPVFCNSDSFVGDQRNPSTLEDSYCFWSSDPPEWLSSLISKELVELDSS