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Lag0009507 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0009507
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibosomal_L30 domain-containing protein
Genome locationchr9:39769137..39769591
RNA-Seq ExpressionLag0009507
SyntenyLag0009507
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010749.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma]3.9e-4895.37Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WS NLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_004151902.1 uncharacterized protein LOC101219925 [Cucumis sativus]3.9e-4893.52Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWS NLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]3.0e-4895.37Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WS NLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_022947175.1 uncharacterized protein LOC111451121 [Cucurbita moschata]6.7e-4894.39Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWS NLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASA
        APSS S+
Subjt:  APSSASA

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]6.0e-4997.22Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWS NLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

TrEMBL top hitse value%identityAlignment
A0A0A0LN29 Ribosomal_L30 domain-containing protein1.9e-4893.52Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWS NLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A1S3C214 50S ribosomal protein L304.2e-4892.59Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWS NLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A6J1FUA4 uncharacterized protein LOC1114488481.4e-4895.37Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WS NLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

A0A6J1G641 uncharacterized protein LOC1114511213.2e-4894.39Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWS NLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASA
        APSS S+
Subjt:  APSSASA

A0A6J1JDZ2 uncharacterized protein LOC1114841523.2e-4896.3Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWS NLYITLVRGIPGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH AL+PPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

SwissProt top hitse value%identityAlignment
A1KB09 50S ribosomal protein L302.8e-0448.08Show/hide
Query:  ITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        +TLV+ + GT++ HR T+  L LR+ N TV   +TP VRGM+ +V  LV VE
Subjt:  ITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

A4QBL5 50S ribosomal protein L302.1e-0446.3Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

C3PL27 50S ribosomal protein L301.6e-0442.59Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q8FS51 50S ribosomal protein L301.2e-0448.15Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q8NSX3 50S ribosomal protein L301.2e-0446.3Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein5.8e-3466.06Show/hide
Query:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNH-L
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGM+ QVKR+VVVETEEMY ARK+    HKALRPPLVV+H  
Subjt:  MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNH-L

Query:  PAPSSASAS
        PA  S++ S
Subjt:  PAPSSASAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCTTTAAGGCCTTCAAAGCCAATGTTCCAATTGCATGGAGTCATAATCTTTATATCACATTAGTGAGAGGAATTCCAGGAACAAGGAGACTTCACAGACGTAC
TTTAGAGGCATTGCGTCTTCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACGCCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAG
AAGAAATGTATAAAGCCCGTAAACAGAAGGTGGAACAGCACAAGGCCCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCTTCTGCTTCT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCTTTAAGGCCTTCAAAGCCAATGTTCCAATTGCATGGAGTCATAATCTTTATATCACATTAGTGAGAGGAATTCCAGGAACAAGGAGACTTCACAGACGTAC
TTTAGAGGCATTGCGTCTTCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACGCCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAG
AAGAAATGTATAAAGCCCGTAAACAGAAGGTGGAACAGCACAAGGCCCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCTTCTGCTTCT
TGA
Protein sequenceShow/hide protein sequence
MNAFKAFKANVPIAWSHNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPSSASASAS