CuGenDBv2

Gene ID	Lag0009612
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	F-box/LRR-repeat protein 3
Genome location	chr9:40858439..40862990
RNA-Seq Expression	Lag0009612
Synteny	Lag0009612
Gene Ontology terms	GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588569.1 F-box/LRR-repeat protein 3, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-07

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

KAG7022363.1 F-box/LRR-repeat protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-07

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

XP_022931716.1 F-box/LRR-repeat protein 3 isoform X2 [Cucurbita moschata]

2.0e-07

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

XP_022969433.1 F-box/LRR-repeat protein 3 isoform X1 [Cucurbita maxima]

2.0e-07

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

XP_022969441.1 F-box/LRR-repeat protein 3 isoform X2 [Cucurbita maxima]

2.0e-07

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYZ2 Uncharacterized protein

1.4e-06

85.71

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Query:  LKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        LKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  LKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

A0A6J1EUF5 F-box/LRR-repeat protein 3 isoform X2

9.6e-08

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

A0A6J1F090 F-box/LRR-repeat protein 3 isoform X1

9.6e-08

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

A0A6J1HXT4 F-box/LRR-repeat protein 3 isoform X2

9.6e-08

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

A0A6J1I0Y8 F-box/LRR-repeat protein 3 isoform X1

9.6e-08

86.49

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Query:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        AELKEVRLDKCLGVTDVGLARIVVGCG+LER S   C
Subjt:  AELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G47056.1 VIER F-box proteine 1

8.3e-04

45.24

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Query:  RCQAELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGACKF
        RC+  LK ++L  C  +TDVG+A     C  L+ FSCG+C F
Subjt:  RCQAELKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGACKF

AT5G27920.1 F-box family protein

1.2e-05

57.14

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Query:  LKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC
        L+E+++DKCL ++DVGLARIVVGC  L + S   C
Subjt:  LKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGAC

Sequences

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CDS sequence

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ATGACGTTGATAGCCCCATTGCTCGTGCTAGAGTGTCGCCGTTTAGTGTTGCAGCTTATAATGCCAGTTCTGCTTCAGAATTTGATGATTGATAAAGCTGTTACAAATGA
TCTGAGCCTTCAACTTTACAGGGAGAACCTACTTGGTGTAGCAACATTTAGTATGAGTTATATGGATTTATCTGAGGTTGAGGAGTTTGATTTTGAGGCGTTCGTCGGGG
CTGAGCTACATGGGGTTGGAGAGGGTGATGAGGGATTGCATTGGGTTGGAAATGGTGGACGTACAGTTGGGGGTTTGGGGATAGGGAAGCGACGGCGGTGTCAAGCTGAG
TTGAAGGAGGTGAGGTTGGATAAGTGTTTGGGGGTTACGGATGTGGGTTTGGCGAGGATTGTTGTTGGTTGTGGGAAATTAGAGAGGTTTAGCTGTGGTGCTTGCAAGTT
TCTGATCTTGTTAAAAAAAAGTGGAGAAATGGAGGAGAAAAGAGAAGAAAAGAGAGAAAGAAGAGGGAAAAAAAGAATTCTTGCCGGCGGTCGACCGGCGAACGGCGGTG
GTCGTCGGGCACCGGATTTGAAGAAGAAGAGATTTTCATCTTCATTGTTCAAGCATCGGATGAGATCAAGGGCATCGTATTTGACTTCAATCTCCTACGCTCCTCTGAAG
TTATCAAGCACGAGCTTGAGCCCCTCCCACATGGCCTTCACCTCATCGGCCAAGACCCCTTTGTCGACTGGAGGCCCGCACAGATAA

mRNA sequence

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Protein sequence

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MTLIAPLLVLECRRLVLQLIMPVLLQNLMIDKAVTNDLSLQLYRENLLGVATFSMSYMDLSEVEEFDFEAFVGAELHGVGEGDEGLHWVGNGGRTVGGLGIGKRRRCQAE
LKEVRLDKCLGVTDVGLARIVVGCGKLERFSCGACKFLILLKKSGEMEEKREEKRERRGKKRILAGGRPANGGGRRAPDLKKKRFSSSLFKHRMRSRASYLTSISYAPLK
LSSTSLSPSHMAFTSSAKTPLSTGGPHR

Lag0009612 (gene) of Sponge gourd (AG-4) v1 genome