CuGenDBv2

Gene ID	Lag0009623
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	H/ACA ribonucleoprotein complex non-core subunit NAF1
Genome location	chr9:40901212..40904760
RNA-Seq Expression	Lag0009623
Synteny	Lag0009623
Gene Ontology terms	GO:0000493 - box H/ACA snoRNP assembly (biological process) GO:0001522 - pseudouridine synthesis (biological process) GO:0042254 - ribosome biogenesis (biological process) GO:0005634 - nucleus (cellular component) GO:0005732 - small nucleolar ribonucleoprotein complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042953.1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa]

1.2e-18

83.33

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVEF+PNS T SAPD LLH SSKLKNS+PLDSFDSK IDYSF DSFLDYDS NDW DELT
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

XP_008466591.1 PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo]

5.9e-18

83.33

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVEFSPNS  AS PD LLHASSKLKNS+PLDSFDSK IDY F DSFLDYDSLNDW +ELT
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

XP_016902388.1 PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo]

2.7e-18

83.33

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVEF+PNS T SAPD LLH SSKLKNS PLDSFDSK IDYSF DSFLDYDS NDW DELT
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

XP_022970813.1 H/ACA ribonucleoprotein complex non-core subunit NAF1 [Cucurbita maxima]

4.1e-19

87.1

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSD--PLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVE S NSTTASAPD LLHASSKLKNS+  PLDSFDSKP+DYSFADSFLDYDSLNDWIDE T
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSD--PLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

XP_031736889.1 H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform X1 [Cucumis sativus]

2.7e-18

83.33

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVEF+PN+ TASAPD LLH SSKLKNS+PLDSFDSK IDYS  DSFLDYDSLNDW DELT
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E2D7 H/ACA ribonucleoprotein complex non-core subunit NAF1

1.3e-18

83.33

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVEF+PNS T SAPD LLH SSKLKNS PLDSFDSK IDYSF DSFLDYDS NDW DELT
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

A0A5A7TE26 H/ACA ribonucleoprotein complex non-core subunit NAF1

2.9e-18

83.33

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVEFSPNS  AS PD LLHASSKLKNS+PLDSFDSK IDY F DSFLDYDSLNDW +ELT
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

A0A5A7TI04 H/ACA ribonucleoprotein complex non-core subunit NAF1

5.8e-19

83.33

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVEF+PNS T SAPD LLH SSKLKNS+PLDSFDSK IDYSF DSFLDYDS NDW DELT
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

A0A5D3CIV9 H/ACA ribonucleoprotein complex non-core subunit NAF1

1.3e-18

83.33

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVEF+PNS T SAPD LLH SSKLKNS PLDSFDSK IDYSF DSFLDYDS NDW DELT
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

A0A6J1I505 H/ACA ribonucleoprotein complex non-core subunit NAF1

2.0e-19

87.1

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Query:  MVEFSPNSTTASAPDALLHASSKLKNSD--PLDSFDSKPIDYSFADSFLDYDSLNDWIDELT
        MVE S NSTTASAPD LLHASSKLKNS+  PLDSFDSKP+DYSFADSFLDYDSLNDWIDE T
Subjt:  MVEFSPNSTTASAPDALLHASSKLKNSD--PLDSFDSKPIDYSFADSFLDYDSLNDWIDELT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCATGTCTGGGATTGTACTTCCCGATGGGGTCACGTCTCTTGGAGAGACGCGATTCAACCGTTCCGTCTAGTTTGTCTTGTTGCCGTCTTTTTCGTCTCGTTATCGTT
TGGTTGTCGTCTGGTCACCGTCTCGTTCGACTCATTACCGTCTGGTCGCTGCAAGGTCGCGTCTGTTGAAAAGACGCGACCTTACATGTCGCGTAGGTTGACCCTACGCA
ACACCTTAAATCCTAAGGGGGTGTTTGGGGTGCCAATTTTGGAAGTGGGGGTTTTGGAAAACACCCCATTTTTCCAAGAAACAAAAAGAACGAAAGAACGAAACCCTTGT
GCTTATTTTCTTCTTCTTCACGCCGTTTTCTCCTCCGAGCTCAGTGTCGCCGCCGTCTCTCTTCCGCTCGTGCCGCCGCCGTCGTTTTTCTTCCGCTCGTGCCGCCGCCG
TCGTTTTTCTTCCGCTCGTGCCGCCGCCGCGTTGCTCGATTTTCTACTCCCTTGCTGTTACTGCTCTGCAATGGTAGAGTTTTCACCCAACTCCACCACTGCGTCTGCTC
CCGACGCCCTCCTTCACGCTTCTTCCAAGCTTAAGAACTCCGACCCGCTTGACTCTTTTGATTCCAAGCCCATCGATTACTCCTTTGCCGATTCCTTCCTCGATTACGAT
TCTTTAAACGACTGGATTGACGAATTAACACCCCTCTTCTTATGGCTGATGCACAAACTCTTCTTCCTAAAGCACAAGACTCTGAACCAGTTGCGCAGGCGAGTGGTGAG
GCTTGTAGTAAATCTGCGGATTTGA

mRNA sequence

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Protein sequence

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MHVWDCTSRWGHVSWRDAIQPFRLVCLVAVFFVSLSFGCRLVTVSFDSLPSGRCKVASVEKTRPYMSRRLTLRNTLNPKGVFGVPILEVGVLENTPFFQETKRTKERNPC
AYFLLLHAVFSSELSVAAVSLPLVPPPSFFFRSCRRRRFSSARAAAALLDFLLPCCYCSAMVEFSPNSTTASAPDALLHASSKLKNSDPLDSFDSKPIDYSFADSFLDYD
SLNDWIDELTPLFLWLMHKLFFLKHKTLNQLRRRVVRLVVNLRI

Lag0009623 (gene) of Sponge gourd (AG-4) v1 genome