CuGenDBv2

Gene ID	Lag0009897
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA repair protein RAD50
Genome location	chr9:43201241..43204696
RNA-Seq Expression	Lag0009897
Synteny	Lag0009897
Gene Ontology terms	GO:0000722 - telomere maintenance via recombination (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0006302 - double-strand break repair (biological process) GO:0007004 - telomere maintenance via telomerase (biological process) GO:0016233 - telomere capping (biological process) GO:0070192 - chromosome organization involved in meiotic cell cycle (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0000794 - condensed nuclear chromosome (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0030870 - Mre11 complex (cellular component) GO:0043047 - single-stranded telomeric DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051880 - G-quadruplex DNA binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003691 - double-stranded telomeric DNA binding (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049132.1 DNA repair protein RAD50 [Cucumis melo var. makuwa]

7.2e-42

86.61

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEKGQVD DEKHLAEAL+PLSKEKDKLLND+NELKDKLNREYEELG+KKR FQQEVETLLR+ SKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQ CD RK
Subjt:  AESQLQSCDIRK

XP_004133980.1 DNA repair protein RAD50 isoform X1 [Cucumis sativus]

7.2e-42

86.61

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEKGQVD DEKHLAEAL+PLSKEKDKLLND+NELKDKLNREYEELG+KKR FQQEVETLLR+ SKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQ CD RK
Subjt:  AESQLQSCDIRK

XP_008438322.1 PREDICTED: DNA repair protein RAD50 [Cucumis melo]

7.2e-42

86.61

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEKGQVD DEKHLAEAL+PLSKEKDKLLND+NELKDKLNREYEELG+KKR FQQEVETLLR+ SKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQ CD RK
Subjt:  AESQLQSCDIRK

XP_022146955.1 DNA repair protein RAD50 [Momordica charantia]

2.9e-43

89.29

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEK QVD DEKHLAEA+VPLSKEKDKLLND+NELK+KLNREYEELGEKKRNFQQEVETLLR+ASKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQSCDIRK
Subjt:  AESQLQSCDIRK

XP_031738582.1 DNA repair protein RAD50 isoform X2 [Cucumis sativus]

7.2e-42

86.61

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEKGQVD DEKHLAEAL+PLSKEKDKLLND+NELKDKLNREYEELG+KKR FQQEVETLLR+ SKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQ CD RK
Subjt:  AESQLQSCDIRK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L416 Zinc-hook domain-containing protein

3.5e-42

86.61

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEKGQVD DEKHLAEAL+PLSKEKDKLLND+NELKDKLNREYEELG+KKR FQQEVETLLR+ SKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQ CD RK
Subjt:  AESQLQSCDIRK

A0A1S3AWR7 DNA repair protein RAD50

3.5e-42

86.61

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEKGQVD DEKHLAEAL+PLSKEKDKLLND+NELKDKLNREYEELG+KKR FQQEVETLLR+ SKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQ CD RK
Subjt:  AESQLQSCDIRK

A0A5A7U014 DNA repair protein RAD50

3.5e-42

86.61

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEKGQVD DEKHLAEAL+PLSKEKDKLLND+NELKDKLNREYEELG+KKR FQQEVETLLR+ SKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQ CD RK
Subjt:  AESQLQSCDIRK

A0A5D3D3I4 DNA repair protein RAD50

3.5e-42

86.61

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEKGQVD DEKHLAEAL+PLSKEKDKLLND+NELKDKLNREYEELG+KKR FQQEVETLLR+ SKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQ CD RK
Subjt:  AESQLQSCDIRK

A0A6J1CYT2 DNA repair protein RAD50

1.4e-43

89.29

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEEELDRLTEEK QVD DEKHLAEA+VPLSKEKDKLLND+NELK+KLNREYEELGEKKRNFQQEVETLLR+ASKIKEYLD K GERLKEL+EKKAQ
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        AESQLQSCDIRK
Subjt:  AESQLQSCDIRK

SwissProt top hits

e value

%identity

Alignment

A0A1P8ASY1 DNA replication ATP-dependent helicase/nuclease JHS1

1.7e-06

54.35

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Query:  LLDGGIKGNDVGIITPYNSLASIIRLAIKIAAVEIHTIDEYQAEEE
        L++ G+   D+GIITPYNS AS+I+ AI    VEIHTID+YQ  ++
Subjt:  LLDGGIKGNDVGIITPYNSLASIIRLAIKIAAVEIHTIDEYQAEEE

Q9SL02 DNA repair protein RAD50

2.1e-28

59.82

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEE+L+RL EEK Q+D D K+L EAL PLSKEK++LL+D+N++K + N+EYEEL EKKRN+QQEVE LL+++ KI EY D K GERL +++EK+  
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        ++SQLQSC+ RK
Subjt:  AESQLQSCDIRK

Arabidopsis top hits

e value

%identity

Alignment

AT1G08840.1 DNA replication helicase, putative

1.2e-07

54.35

Show/hide

Query:  LLDGGIKGNDVGIITPYNSLASIIRLAIKIAAVEIHTIDEYQAEEE
        L++ G+   D+GIITPYNS AS+I+ AI    VEIHTID+YQ  ++
Subjt:  LLDGGIKGNDVGIITPYNSLASIIRLAIKIAAVEIHTIDEYQAEEE

AT1G08840.2 DNA replication helicase, putative

1.2e-07

54.35

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Query:  LLDGGIKGNDVGIITPYNSLASIIRLAIKIAAVEIHTIDEYQAEEE
        L++ G+   D+GIITPYNS AS+I+ AI    VEIHTID+YQ  ++
Subjt:  LLDGGIKGNDVGIITPYNSLASIIRLAIKIAAVEIHTIDEYQAEEE

AT2G31970.1 DNA repair-recombination protein (RAD50)

1.5e-29

59.82

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Query:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ
        D  +AEE+L+RL EEK Q+D D K+L EAL PLSKEK++LL+D+N++K + N+EYEEL EKKRN+QQEVE LL+++ KI EY D K GERL +++EK+  
Subjt:  DEYQAEEELDRLTEEKGQVDFDEKHLAEALVPLSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQ

Query:  AESQLQSCDIRK
        ++SQLQSC+ RK
Subjt:  AESQLQSCDIRK

Sequences

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CDS sequence

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ATGTATATTGATACTTTATTAAGAAACAAAGAAGATTGGTACTTGGATCAGGGAAAGCTACTTGGAATTTTATCAGGTGACATTGATCTCTACTTTCTTAATTTTATAGG
TCACGTGGGATTGCTTGATGGTGGGATCAAAGGGAATGACGTTGGCATTATCACTCCGTATAACTCCCTGGCAAGCATCATTCGTCTAGCTATCAAGATAGCCGCTGTAG
AGATACATACCATTGACGAATACCAGGCAGAAGAAGAGTTGGATCGTCTGACTGAGGAAAAAGGTCAAGTTGATTTTGATGAGAAGCATTTGGCAGAAGCCCTTGTCCCT
TTGTCAAAGGAGAAAGATAAATTACTTAACGACCATAATGAACTCAAAGATAAACTTAATCGTGAATATGAGGAGCTGGGTGAGAAAAAGAGGAATTTTCAGCAGGAAGT
TGAGACACTTCTTAGATCAGCTTCTAAGATTAAAGAGTATCTTGATTTCAAGAATGGTGAGAGGCTGAAAGAATTAGAGGAAAAGAAAGCACAGGCAGAATCTCAACTTC
AAAGTTGTGACATTAGGAAGTAG

mRNA sequence

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Protein sequence

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MYIDTLLRNKEDWYLDQGKLLGILSGDIDLYFLNFIGHVGLLDGGIKGNDVGIITPYNSLASIIRLAIKIAAVEIHTIDEYQAEEELDRLTEEKGQVDFDEKHLAEALVP
LSKEKDKLLNDHNELKDKLNREYEELGEKKRNFQQEVETLLRSASKIKEYLDFKNGERLKELEEKKAQAESQLQSCDIRK

Lag0009897 (gene) of Sponge gourd (AG-4) v1 genome