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Lag0009899 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0009899
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA repair protein RAD50
Genome locationchr9:43214518..43215388
RNA-Seq ExpressionLag0009899
SyntenyLag0009899
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006312 - mitotic recombination (biological process)
GO:0006979 - response to oxidative stress (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0030870 - Mre11 complex (cellular component)
GO:0004601 - peroxidase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0020037 - heme binding (molecular function)
GO:0042162 - telomeric DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582490.1 DNA repair protein RAD50, partial [Cucurbita argyrosperma subsp. sororia]5.1e-0985Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVNNNLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
XP_008438322.1 PREDICTED: DNA repair protein RAD50 [Cucumis melo]2.0e-0882.5Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVN+NLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
XP_022924587.1 DNA repair protein RAD50 [Cucurbita moschata]5.1e-0985Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVNNNLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
XP_022980190.1 DNA repair protein RAD50 [Cucurbita maxima]5.1e-0985Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVNNNLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
XP_023527295.1 DNA repair protein RAD50 [Cucurbita pepo subsp. pepo]5.1e-0985Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVNNNLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
TrEMBL top hitse value%identityAlignment
A0A0A0L416 Zinc-hook domain-containing protein9.5e-0955.7Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMELIHVGRAIRLSCSLGQHLMPFCFFV---LQALLELLDQED
        VG+EYDDLNSKSRE EKD NMLQMK+QEVN+NLSRYQ E+    R +    S  Q L P  F V   L+AL    +++D
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMELIHVGRAIRLSCSLGQHLMPFCFFV---LQALLELLDQED
A0A5A7U014 DNA repair protein RAD509.5e-0982.5Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVN+NLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
A0A5D3D3I4 DNA repair protein RAD509.5e-0982.5Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVN+NLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
A0A6J1E9E7 DNA repair protein RAD502.5e-0985Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVNNNLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
A0A6J1IVK4 DNA repair protein RAD502.5e-0985Show/hide
Query:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
        VG+EYDDLNSKSRE EKD NMLQMK+QEVNNNLSRYQ E+
Subjt:  VGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMEL
SwissProt top hitse value%identityAlignment
Q9SL02 DNA repair protein RAD502.1e-0563.89Show/hide
Query:  EYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQME
        EYDDL+ KSRE EK+ NMLQMK+QEVNN+L ++  +
Subjt:  EYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQME
Arabidopsis top hitse value%identityAlignment
AT2G31970.1 DNA repair-recombination protein (RAD50)1.5e-0663.89Show/hide
Query:  EYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQME
        EYDDL+ KSRE EK+ NMLQMK+QEVNN+L ++  +
Subjt:  EYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQME

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTTCCTTCCTTTCAAAGAACAAGTTTGGGTCTTCTTTTCTCTTATCTCAGGGTTGTTGTTGGTTTGGAGTATGATGACCTAAATTCTAAATCTCGTGAGGTTGA
GAAGGATGCAAATATGTTGCAAATGAAAATGCAGGAAGTTAACAACAACCTTTCCAGATATCAAATGGAACTTATACATGTTGGTAGAGCAATCCGATTATCATGTTCAC
TTGGTCAACATTTGATGCCCTTCTGCTTCTTTGTTTTACAGGCATTGCTTGAGCTTTTAGACCAGGAGGATTCATCTGAATTACGAGGTAGGAATGGTAACAAATTGGCT
ACTAGAGTTGATTCAGCTGCAATGCAAGTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTTCCTTCCTTTCAAAGAACAAGTTTGGGTCTTCTTTTCTCTTATCTCAGGGTTGTTGTTGGTTTGGAGTATGATGACCTAAATTCTAAATCTCGTGAGGTTGA
GAAGGATGCAAATATGTTGCAAATGAAAATGCAGGAAGTTAACAACAACCTTTCCAGATATCAAATGGAACTTATACATGTTGGTAGAGCAATCCGATTATCATGTTCAC
TTGGTCAACATTTGATGCCCTTCTGCTTCTTTGTTTTACAGGCATTGCTTGAGCTTTTAGACCAGGAGGATTCATCTGAATTACGAGGTAGGAATGGTAACAAATTGGCT
ACTAGAGTTGATTCAGCTGCAATGCAAGTTCCTTAA
Protein sequenceShow/hide protein sequence
MAFPSFQRTSLGLLFSYLRVVVGLEYDDLNSKSREVEKDANMLQMKMQEVNNNLSRYQMELIHVGRAIRLSCSLGQHLMPFCFFVLQALLELLDQEDSSELRGRNGNKLA
TRVDSAAMQVP