; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010031 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010031
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionNusB domain-containing protein
Genome locationchr9:44103194..44107685
RNA-Seq ExpressionLag0010031
SyntenyLag0010031
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0031564 - transcription antitermination (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR006027 - NusB/RsmB/TIM44
IPR011605 - NusB antitermination factor
IPR035926 - NusB-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605513.1 hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sororia]2.3e-14387.87Show/hide
Query:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LPTRLD VIATRPNFHFS  +SGICRFPF TSAIVPYVK+ VP  CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWDSHVLKI+KVIP TWKDKP+GRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEVVS
         EVVS
Subjt:  QEVVS

XP_022948088.1 uncharacterized protein LOC111451776 [Cucurbita moschata]2.8e-14488.2Show/hide
Query:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LPTRLD VIATRPNFHFS  +SGICRFPF TSAIVPYVK+ VPH CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWDSHVLKI+KVIP TWKDKP+GRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEVVS
         EVVS
Subjt:  QEVVS

XP_023007062.1 uncharacterized protein LOC111499665 [Cucurbita maxima]3.1e-14387.87Show/hide
Query:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LPTRLD VIATRPNFHFS H+SGIC FPF TSAIVPYVK+ VP  CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWDSHVLKI+KVIP TWKDKP+GRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEVVS
         EVVS
Subjt:  QEVVS

XP_023532267.1 uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo]3.1e-14387.54Show/hide
Query:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LPTRLD VIATRPNFHFS H+SGICRFPF TSAIVPYVK+ VP  CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAE+LAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWDSHVLKI+KVIP TWKDKP+GRILEL ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEVVS
         EVVS
Subjt:  QEVVS

XP_038901769.1 uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]8.6e-13888.07Show/hide
Query:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL
        D+VI TRPNFHFS HISGICRFPFR S+IVP+VKD + H CPQASL ASTSF EN VA++ +S+ VSS  TIPKVDKSG+FCSPRAARELALSIVYAACL
Subjt:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL

Query:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDP+RLFEKRLN RRE GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDS IEAEILAAPPKMVYSKLILRFTRKLLVAVVD WDS VLK
Subjt:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV
        IEKVIPPTWKDKP+ RILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI EIDS+HAREKQEV
Subjt:  IEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV

TrEMBL top hitse value%identityAlignment
A0A0A0KWZ5 NusB domain-containing protein1.4e-13384.19Show/hide
Query:  HLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELA
        H   L T  D+VI TRPNFHFSYHISGIC+FPF  S+IVP++KD +P FC QASL ASTSFSEN VA+E +S+ +SS   IPKVDKSG+FCSPRAARELA
Subjt:  HLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELA

Query:  LSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVV
        LSIVYAACLEGSDP+RLFEKRLNARRE GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAV 
Subjt:  LSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVV

Query:  DRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        D WDS  LKIEKVIPPTWK+KP+GRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI EIDS  AREK
Subjt:  DRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

A0A1S3BNR2 uncharacterized protein LOC103491638 isoform X11.1e-13385.26Show/hide
Query:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL
        D+VI TRPNFHFS HISGIC+FPF  S+IVP+VK+ +P  C QASL ASTSF EN VA+E +S+ VSS  TIPK+DKSG+FCSPRAARELALSIVYAACL
Subjt:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL

Query:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDP+RLFEKRLN+RRE GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPKMVYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV
        IEKVIPPTWK+KP+GRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DST AREKQEV
Subjt:  IEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV

A0A5D3DDJ4 NusB/RsmB/TIM441.1e-13383.67Show/hide
Query:  HLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELA
        H   L T  D+VI TRPNFHFS HISGIC+FPF  S+IVP+VK+ +P  C QASL ASTSF EN VA+E +S+ VSS  TIPK+DKSG+FCSPRAARELA
Subjt:  HLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELA

Query:  LSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVV
        LSIVYAACLEGSDP+RLFEKRLN+RRE GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPKMVYSKLILRFTRKLLVAVV
Subjt:  LSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVV

Query:  DRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV
        D WD+  LKIEKVIPPTWK+KP+GRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DST AREKQEV
Subjt:  DRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV

A0A6J1G8E0 uncharacterized protein LOC1114517761.3e-14488.2Show/hide
Query:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LPTRLD VIATRPNFHFS  +SGICRFPF TSAIVPYVK+ VPH CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWDSHVLKI+KVIP TWKDKP+GRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEVVS
         EVVS
Subjt:  QEVVS

A0A6J1KXJ4 uncharacterized protein LOC1114996651.5e-14387.87Show/hide
Query:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LPTRLD VIATRPNFHFS H+SGIC FPF TSAIVPYVK+ VP  CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWDSHVLKI+KVIP TWKDKP+GRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEVVS
         EVVS
Subjt:  QEVVS

SwissProt top hitse value%identityAlignment
A7GWZ7 Transcription antitermination protein NusB8.1e-0635.37Show/hide
Query:  VAVVDRWDSHVLK---IEKVIPPTWKDKPSGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
        +  ++ +D+  LK   +++++ P  K+K   R  I+EL IL L + E+   GT   ++INEA++LAK     +AP+ ING L
Subjt:  VAVVDRWDSHVLK---IEKVIPPTWKDKPSGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL

B1WXY6 Transcription antitermination protein NusB1.5e-0434.12Show/hide
Query:  LVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        L+  ++R    + +  + +   W+ K   +I +  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F   I
Subjt:  LVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Q18B61 Transcription antitermination protein NusB1.8e-0536.84Show/hide
Query:  KIEKVIPPTWKDKPSGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINE
        KI+++I    K+    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P+ ING L + V +I +
Subjt:  KIEKVIPPTWKDKPSGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINE

Q5N1J7 Transcription antitermination protein NusB2.0e-0452.08Show/hide
Query:  LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Q8GIR7 Transcription antitermination protein NusB2.0e-0452.08Show/hide
Query:  LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Arabidopsis top hitse value%identityAlignment
AT4G26370.1 antitermination NusB domain-containing protein1.7e-9176.28Show/hide
Query:  IPKVDKSGRFCSPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPP
        +PK+DKSGR  SPRAARELAL I+YAACLEGSDPIRLFEKR+NARREPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S IEAE+L+APP
Subjt:  IPKVDKSGRFCSPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPP

Query:  KMVYSKLILRFTRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        K+VYSKL+LRF +KLL AVVD+WDSHV+ IEK+ PP WK  P+GRILE  ILHLAMSE+ V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFVKD 
Subjt:  KMVYSKLILRFTRKLLVAVVDRWDSHVLKIEKVIPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Query:  NEIDSTHARE-KQEV
            +  A E KQEV
Subjt:  NEIDSTHARE-KQEV

AT4G26370.2 antitermination NusB domain-containing protein3.7e-3877.08Show/hide
Query:  IPKVDKSGRFCSPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEIL
        +PK+DKSGR  SPRAARELAL I+YAACLEGSDPIRLFEKR+NARREPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S I   ++
Subjt:  IPKVDKSGRFCSPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAACTTGTATCGACGCCATTGCACCTGGTTCTTTTGCCGACGAGACTCGATAGAGTTATTGCCACCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAAT
ATGCCGGTTCCCATTCCGCACTAGTGCAATCGTTCCCTATGTAAAAGATTTTGTGCCACACTTCTGCCCTCAAGCCTCACTTCACGCTTCTACTTCTTTTTCCGAAAATT
CCGTGGCCAAAGAGGGCAATTCTGTTTTAGTTTCTTCCACAATACCAAAGGTCGACAAGAGCGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATT
GTTTATGCAGCTTGTTTAGAAGGCTCTGATCCGATTCGTCTCTTCGAGAAGCGGTTGAATGCCCGTCGAGAACCGGGATACGAATTTGACAAGACATCATTGATGGAATA
TAATCATATGAGCTTTGGAGGCCCGCCAGTTACTGTGGAAACAACTGAAGAAGCAGATGAGCTTTTACGTAAGGATGAAAAGGATTCTGCAATTGAGGCAGAAATCCTTG
CAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTGCGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGAAAAAGTC
ATTCCTCCAACTTGGAAGGACAAGCCATCAGGACGGATTCTCGAACTCTGTATTCTTCACTTGGCTATGTCTGAAATAACGGTCGTCGGAACAAGGCATCAGATTGTCAT
TAACGAGGCGGTTGATCTTGCAAAACGATTCTGTGACGGAGCAGCACCTCGAATTATTAATGGGTGCCTTAGGACCTTTGTGAAGGACATCAATGAAATTGATTCAACTC
ATGCTCGAGAGAAGCAAGAAGTTGTCAGTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAACTTGTATCGACGCCATTGCACCTGGTTCTTTTGCCGACGAGACTCGATAGAGTTATTGCCACCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAAT
ATGCCGGTTCCCATTCCGCACTAGTGCAATCGTTCCCTATGTAAAAGATTTTGTGCCACACTTCTGCCCTCAAGCCTCACTTCACGCTTCTACTTCTTTTTCCGAAAATT
CCGTGGCCAAAGAGGGCAATTCTGTTTTAGTTTCTTCCACAATACCAAAGGTCGACAAGAGCGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATT
GTTTATGCAGCTTGTTTAGAAGGCTCTGATCCGATTCGTCTCTTCGAGAAGCGGTTGAATGCCCGTCGAGAACCGGGATACGAATTTGACAAGACATCATTGATGGAATA
TAATCATATGAGCTTTGGAGGCCCGCCAGTTACTGTGGAAACAACTGAAGAAGCAGATGAGCTTTTACGTAAGGATGAAAAGGATTCTGCAATTGAGGCAGAAATCCTTG
CAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTGCGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGAAAAAGTC
ATTCCTCCAACTTGGAAGGACAAGCCATCAGGACGGATTCTCGAACTCTGTATTCTTCACTTGGCTATGTCTGAAATAACGGTCGTCGGAACAAGGCATCAGATTGTCAT
TAACGAGGCGGTTGATCTTGCAAAACGATTCTGTGACGGAGCAGCACCTCGAATTATTAATGGGTGCCTTAGGACCTTTGTGAAGGACATCAATGAAATTGATTCAACTC
ATGCTCGAGAGAAGCAAGAAGTTGTCAGTGCATGA
Protein sequenceShow/hide protein sequence
MVELVSTPLHLVLLPTRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDFVPHFCPQASLHASTSFSENSVAKEGNSVLVSSTIPKVDKSGRFCSPRAARELALSI
VYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDSHVLKIEKV
IPPTWKDKPSGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEVVSA