CuGenDBv2

Gene ID	Lag0010063
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	zinc finger CCCH domain-containing protein 24
Genome location	chr9:44345696..44346055
RNA-Seq Expression	Lag0010063
Synteny	Lag0010063
Gene Ontology terms	GO:0001510 - RNA methylation (biological process) GO:0006396 - RNA processing (biological process) GO:0003677 - DNA binding (molecular function) GO:0008173 - RNA methyltransferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000571 - Zinc finger, CCCH-type IPR036855 - Zinc finger, CCCH-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605546.1 Zinc finger CCCH domain-containing protein 24, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-40

86.6

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N PQT ALP ESL EQSDCQSTEASVAGEK+KRTD DSDTANPKPDPSLNPLWKT LCSYFRRHSGSCSHGS CRYAHGEEELR+ PDNSWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

KAG7013896.1 Zinc finger CCCH domain-containing protein 24 [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-40

86.6

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N PQT ALP ESL EQSDCQSTEASVAGEK+KRTD DSDTANPKPDPSLNPLWKT LCSYFRRHSGSCSHGS CRYAHGEEELR+ PDNSWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

XP_022958090.1 zinc finger CCCH domain-containing protein 24 [Cucurbita moschata]

1.5e-40

86.6

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N PQT ALP ESL EQSDCQSTEASVAGEK+KRTD DSDTANPKPDPSLNPLWKT LCSYFRRHSGSCSHGS CRYAHGEEELR+ PDNSWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

XP_022995395.1 zinc finger CCCH domain-containing protein 24 [Cucurbita maxima]

5.5e-40

85.57

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N PQT ALP E L EQSDCQSTEASVAGEK+KRTD DSDTANPKPDPSLNPLWKT LCSYFRRHSGSCSHGS CRYAHGEEELR+ PDNSWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

XP_023534370.1 zinc finger CCCH domain-containing protein 24 [Cucurbita pepo subsp. pepo]

7.2e-40

85.57

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N PQT ALP ESL EQSDCQSTEASVAGEK+KRTD D DTANPKPDPSLNPLWKT LCSYFRRHSGSCSHGS CRYAHGEEELR+ PDNSWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDA7 C3H1-type domain-containing protein

1.2e-35

78.35

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N+P TTAL PESL +QSD QS  ASVAGEK+KRTDPDSD A P PDPS NPLWKT LCSYFRRHSGSCSHG  CRYAHGEEELRQ PD SWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

A0A1S3CKC6 zinc finger CCCH domain-containing protein 24

2.2e-34

75.26

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N+  TTA PPESLP+Q+D QS  ASVAGEK+KRTDPDSD A P  DPS NPLW+T LCSYFRRHSGSCSHG+ CRYAHGEEELRQ PD SWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

A0A5D3CSW9 Zinc finger CCCH domain-containing protein 24

2.2e-34

75.26

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N+  TTA PPESLP+Q+D QS  ASVAGEK+KRTDPDSD A P  DPS NPLW+T LCSYFRRHSGSCSHG+ CRYAHGEEELRQ PD SWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

A0A6J1H2G6 zinc finger CCCH domain-containing protein 24

7.1e-41

86.6

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N PQT ALP ESL EQSDCQSTEASVAGEK+KRTD DSDTANPKPDPSLNPLWKT LCSYFRRHSGSCSHGS CRYAHGEEELR+ PDNSWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

A0A6J1K3X1 zinc finger CCCH domain-containing protein 24

2.7e-40

85.57

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Query:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        N PQT ALP E L EQSDCQSTEASVAGEK+KRTD DSDTANPKPDPSLNPLWKT LCSYFRRHSGSCSHGS CRYAHGEEELR+ PDNSWDP+  R
Subjt:  NIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

SwissProt top hits

e value

%identity

Alignment

Q8L7S3 Zinc finger CCCH domain-containing protein 24

7.6e-16

47.47

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Query:  IPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSL---NPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        IP  T+   E LP      +      GEK+KR D D  T     D  +   +P WKT LCSYFRR + SCSHG+ C+YAHGE ELR  PDN+WDP+  R
Subjt:  IPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSL---NPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

Q9LT81 Zinc finger CCCH domain-containing protein 39

1.2e-05

42.19

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Query:  PDSDTANPKPDPSLNP----------LWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDN
        P   ++NP   PSLNP           +KTR+C+ FR  +G+C +G  C +AHG E+LRQ P N
Subjt:  PDSDTANPKPDPSLNP----------LWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDN

Arabidopsis top hits

e value

%identity

Alignment

AT2G28450.1 zinc finger (CCCH-type) family protein

5.4e-17

47.47

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Query:  IPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSL---NPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        IP  T+   E LP      +      GEK+KR D D  T     D  +   +P WKT LCSYFRR + SCSHG+ C+YAHGE ELR  PDN+WDP+  R
Subjt:  IPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSL---NPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

AT2G28450.2 zinc finger (CCCH-type) family protein

5.4e-17

47.47

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Query:  IPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSL---NPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR
        IP  T+   E LP      +      GEK+KR D D  T     D  +   +P WKT LCSYFRR + SCSHG+ C+YAHGE ELR  PDN+WDP+  R
Subjt:  IPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSL---NPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDNSWDPSGLR

AT3G19360.1 Zinc finger (CCCH-type) family protein

8.6e-07

42.19

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Query:  PDSDTANPKPDPSLNP----------LWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDN
        P   ++NP   PSLNP           +KTR+C+ FR  +G+C +G  C +AHG E+LRQ P N
Subjt:  PDSDTANPKPDPSLNP----------LWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDN

Sequences

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CDS sequence

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ATGGGAACGTCACGTCGGAATAACAGAATCAACGACCGAAGACTACTTTCACTGAAAAAACATAACATCCCACAAACTACTGCACTGCCGCCGGAATCTTTACCGGAGCA
ATCTGATTGCCAATCAACCGAAGCTAGTGTTGCGGGGGAAAAACAGAAGAGAACAGACCCAGATTCTGATACTGCAAATCCAAAGCCGGATCCGTCTCTGAATCCTCTTT
GGAAAACCAGATTATGCTCCTACTTTAGGCGTCATTCGGGGTCGTGTAGCCATGGAAGTGCTTGTCGCTACGCTCATGGCGAGGAGGAGCTTAGGCAATGCCCTGATAAC
TCGTGGGATCCTAGCGGGCTAAGAAGGTGA

mRNA sequence

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Protein sequence

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MGTSRRNNRINDRRLLSLKKHNIPQTTALPPESLPEQSDCQSTEASVAGEKQKRTDPDSDTANPKPDPSLNPLWKTRLCSYFRRHSGSCSHGSACRYAHGEEELRQCPDN
SWDPSGLRR

Lag0010063 (gene) of Sponge gourd (AG-4) v1 genome