CuGenDBv2

Gene ID	Lag0010078
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:44444654..44445243
RNA-Seq Expression	Lag0010078
Synteny	Lag0010078
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.3e-14

34.32

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Query:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV
        +S  SS   + N +  +P       G+K S  KL+++ FL+WKFQ            FL S  E             +S+T  P P Y  W RQD LI+ 
Subjt:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV

Query:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD
        WLL SM+  I+ + L+CK++KE+W  L   FS +++A+ ++ K KL   KKG S+   ++ L IL  +D
Subjt:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

3.9e-14

34.15

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Query:  VSERSSSEAITNPK--FINPGSKTSTPKLDEENFLMWKFQ-----------------------FLNSTDES--SSTRIPTPGYDYWIRQDNLITVWLLSS
        +S  SS   + N +      G+K S  KL ++NFL+WKFQ                       +L ST  S  S+TR P P Y  W R + LI+ WLL S
Subjt:  VSERSSSEAITNPK--FINPGSKTSTPKLDEENFLMWKFQ-----------------------FLNSTDES--SSTRIPTPGYDYWIRQDNLITVWLLSS

Query:  MTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD
        M+  I+ + ++CK++KE+W  L   FS +++A+ ++ K KL   KKG S+S  ++ L I   +D
Subjt:  MTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

8.6e-14

32.11

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Query:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV
        +S  SS   + N +  +P        +K S  KL ++NFL+WKFQ            FL S  E             +S+TR P P Y  W RQD LI+ 
Subjt:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV

Query:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKK----------------------GHSISHSDHALYILGVL
        WLL SM+  I+ + L+CK++KE+W  L   FS +++A+ ++ K KL   KK                         +S  DH LYIL  L
Subjt:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKK----------------------GHSISHSDHALYILGVL

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.3e-14

34.32

Show/hide

Query:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV
        +S  SS   + N +  +P       G+K S  KL+++ FL+WKFQ            FL S  E             +S+T  P P Y  W RQD LI+ 
Subjt:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV

Query:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD
        WLL SM+  I+ + L+CK++KE+W  L   FS +++A+ ++ K KL   KKG S+   ++ L IL  +D
Subjt:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]

4.9e-17

37.2

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Query:  SSVSERSSSEAITNPKFINPGSKTSTPKLDEENFLMWKF-----------------------QFLNST-DESSSTRI-PTPGYDYWIRQDNLITVWLLSS
        SS+    ++  I   K INPGSK S  +L+++N L+WKF                       QF+ +T DESSS+ +   P Y  WI+QD LI+ WLL S
Subjt:  SSVSERSSSEAITNPKFINPGSKTSTPKLDEENFLMWKF-----------------------QFLNST-DESSSTRI-PTPGYDYWIRQDNLITVWLLSS

Query:  MTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD
        M   I+ + L CK+++E+W+ L   F+ + +ARV++LK KL   KKG ++S  D+ L I  ++D
Subjt:  MTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-14

34.32

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Query:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV
        +S  SS   + N +  +P       G+K S  KL+++ FL+WKFQ            FL S  E             +S+T  P P Y  W RQD LI+ 
Subjt:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV

Query:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD
        WLL SM+  I+ + L+CK++KE+W  L   FS +++A+ ++ K KL   KKG S+   ++ L IL  +D
Subjt:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

1.9e-14

34.15

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Query:  VSERSSSEAITNPK--FINPGSKTSTPKLDEENFLMWKFQ-----------------------FLNSTDES--SSTRIPTPGYDYWIRQDNLITVWLLSS
        +S  SS   + N +      G+K S  KL ++NFL+WKFQ                       +L ST  S  S+TR P P Y  W R + LI+ WLL S
Subjt:  VSERSSSEAITNPK--FINPGSKTSTPKLDEENFLMWKFQ-----------------------FLNSTDES--SSTRIPTPGYDYWIRQDNLITVWLLSS

Query:  MTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD
        M+  I+ + ++CK++KE+W  L   FS +++A+ ++ K KL   KKG S+S  ++ L I   +D
Subjt:  MTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-14

34.32

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Query:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV
        +S  SS   + N +  +P       G+K S  KL+++ FL+WKFQ            FL S  E             +S+T  P P Y  W RQD LI+ 
Subjt:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV

Query:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD
        WLL SM+  I+ + L+CK++KE+W  L   FS +++A+ ++ K KL   KKG S+   ++ L IL  +D
Subjt:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

4.2e-14

32.11

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Query:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV
        +S  SS   + N +  +P        +K S  KL ++NFL+WKFQ            FL S  E             +S+TR P P Y  W RQD LI+ 
Subjt:  VSERSSSEAITNPKFINP-------GSKTSTPKLDEENFLMWKFQ------------FLNSTDE-------------SSSTRIPTPGYDYWIRQDNLITV

Query:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKK----------------------GHSISHSDHALYILGVL
        WLL SM+  I+ + L+CK++KE+W  L   FS +++A+ ++ K KL   KK                         +S  DH LYIL  L
Subjt:  WLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKK----------------------GHSISHSDHALYILGVL

A0A6J1DLT9 uncharacterized protein LOC111021757

2.4e-17

37.2

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Query:  SSVSERSSSEAITNPKFINPGSKTSTPKLDEENFLMWKF-----------------------QFLNST-DESSSTRI-PTPGYDYWIRQDNLITVWLLSS
        SS+    ++  I   K INPGSK S  +L+++N L+WKF                       QF+ +T DESSS+ +   P Y  WI+QD LI+ WLL S
Subjt:  SSVSERSSSEAITNPKFINPGSKTSTPKLDEENFLMWKF-----------------------QFLNST-DESSSTRI-PTPGYDYWIRQDNLITVWLLSS

Query:  MTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD
        M   I+ + L CK+++E+W+ L   F+ + +ARV++LK KL   KKG ++S  D+ L I  ++D
Subjt:  MTTAIIVEFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKGHSISHSDHALYILGVLD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.3e-04

24.29

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Query:  MSSSVSERSSSEAITNPKFINPG----SKTSTPKL--DEENFLMWKFQ---FLNSTDESS--STRIPTPG-----YDYWIRQDNLITVWLLSSMTTAIIV
        M+ ++   S +    +P ++ P     S  S  KL  DE+N++ WK +   FL  T +       +P P      Y  W + + ++  WL++SMT  ++ 
Subjt:  MSSSVSERSSSEAITNPKFINPG----SKTSTPKL--DEENFLMWKFQ---FLNSTDESS--STRIPTPG-----YDYWIRQDNLITVWLLSSMTTAIIV

Query:  EFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKG
          +Y +T+ ++W  L   F      ++ +L+ +L T ++G
Subjt:  EFLYCKTSKEVWSHLSARFSLKHMARVLELKTKLGTTKKG

Sequences

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CDS sequence

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ATGAGTTCTTCAGTTTCGGAAAGAAGCTCTTCAGAAGCAATCACGAATCCAAAATTCATCAATCCTGGGAGCAAGACTTCGACTCCGAAGTTAGATGAAGAGAATTTCTT
GATGTGGAAATTTCAATTCCTGAATTCTACCGATGAATCGTCTTCTACACGAATCCCTACTCCTGGGTACGATTACTGGATTCGACAGGACAATCTCATCACAGTATGGC
TTCTTAGTTCGATGACTACTGCGATTATTGTTGAATTTCTTTATTGCAAAACTTCCAAAGAGGTGTGGTCTCATCTTTCAGCCCGTTTTTCGTTGAAACACATGGCTAGG
GTTCTTGAACTTAAGACAAAACTTGGAACAACCAAGAAAGGACACTCTATTTCACATAGTGATCATGCATTGTATATACTAGGGGTCTTGGACCTGAATATGATCCCACT
GTATCTGTCCTGA

mRNA sequence

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Protein sequence

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MSSSVSERSSSEAITNPKFINPGSKTSTPKLDEENFLMWKFQFLNSTDESSSTRIPTPGYDYWIRQDNLITVWLLSSMTTAIIVEFLYCKTSKEVWSHLSARFSLKHMAR
VLELKTKLGTTKKGHSISHSDHALYILGVLDLNMIPLYLS

Lag0010078 (gene) of Sponge gourd (AG-4) v1 genome