; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010083 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010083
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionexosome complex component RRP41-like
Genome locationchr9:44489303..44492977
RNA-Seq ExpressionLag0010083
SyntenyLag0010083
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]7.5e-13596.51Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP  EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES ATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE

XP_022140702.1 exosome complex component RRP41-like [Momordica charantia]1.5e-13594.94Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP TTTYSPSPT HKTRPPIFRSD+ DWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP+ EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESAT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE

XP_022944714.1 exosome complex component RRP41-like [Cucurbita moschata]7.5e-13596.51Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP TTTYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP  EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES ATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]7.5e-13596.51Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP  EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES ATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE

XP_023512894.1 exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]6.4e-13496.12Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPTT KTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP  EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES ATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein3.2e-13192.64Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP TTTYSPSPT HKTRP +FR+DDV+WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        FSTPVRGQGSENK+FSSMLHK+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID + EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESA-TVSEE
        LMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV+IMRSCLKESA T+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESA-TVSEE

A0A1S3CKF3 exosome complex component RRP41-like1.3e-13293.82Show/hide
Query:  MAKKATP-VTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYT
        MAKKATP  TTTYSPSPT HKTRPP+FR+DDV+WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYT
Subjt:  MAKKATP-VTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP+ EEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDG

Query:  NLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE
        +LMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV+IMRSCLKES AT+SEE
Subjt:  NLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE

A0A6J1CHT0 exosome complex component RRP41-like7.4e-13694.94Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP TTTYSPSPT HKTRPPIFRSD+ DWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP+ EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESAT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE

A0A6J1FYV1 exosome complex component RRP41-like3.6e-13596.51Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP TTTYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP  EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES ATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE

A0A6J1JDA9 exosome complex component RRP41-like3.6e-13596.51Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMM+SDIGRLNCSVSYTT
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP  EEENYQDG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES ATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATVSEE

SwissProt top hitse value%identityAlignment
A2RVK7 Exosome complex component RRP41-like4.9e-10572.76Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MA K    T TYSP     ++R PIF+  D+DW RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM++SD+GRLNC+VSYT 
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE
         M+TCMPSRYE+TQLTITGEW+T  INE MQLCLDAS KL +IMR CLK+SA+ S+E
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE

O26779 Exosome complex component Rrp412.7e-2631.22Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMFSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIIL
        VR DGR F + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   D   + C  +   FS   R   G    + E S +  +AL  A+IL
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMFSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIIL

Query:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTITGEWSTAKINEG
        E FP++ +DVF  VLE+ G      I+ AS+ALADAGI + D+V + +    G  +++D   EE+     ++ +  +P   E+T L   G  +  +    
Subjt:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTITGEWSTAKINEG

Query:  MQLCLDASCKLVKIMRSCLKE
        + L ++   ++ ++ +  L++
Subjt:  MQLCLDASCKLVKIMRSCLKE

O59223 Exosome complex component Rrp419.2e-2733.48Show/hide
Query:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMFSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMFSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T++DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY + ++ +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVKIMRSCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGEWSTAKINEGMQLCLDASCKLVKIMRSCLKE

Q6P0I8 Exosome complex component MTR31.1e-3035.66Show/hide
Query:  PVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDG----RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMFSDIGRLNCSVSYTTF
        PV T     P   ++ P +F S D     P      RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      F
Subjt:  PVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDG----RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMFSDIGRLNCSVSYTTF

Query:  STPVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEE-----
        S   RG   QGSE ++ S+ L ++L   + L  +P++ +DV  +VLE+ GS L   ++CAS+ALADAGI +YD+V   ++   G   L+DP + E     
Subjt:  STPVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEE-----

Query:  -ENYQD--GNLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCL
         E Y D  G + +  +P+  +V+ L   GE     + E M+ C+D   KL  +++  L
Subjt:  -ENYQD--GNLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCL

Q8U0L9 Exosome complex component Rrp415.4e-2733.91Show/hide
Query:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMFSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMFSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T +DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY + ++ +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVKIMRSCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGEWSTAKINEGMQLCLDASCKLVKIMRSCLKE

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein1.1e-1131.29Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPLFEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPLFEEE

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein1.1e-1131.29Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPLFEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPLFEEE

AT3G61620.1 3'-5'-exoribonuclease family protein2.7e-2130.04Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMFSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMFSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTITGEWSTAKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D  + E++    ++ +  +P   +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTITGEWSTAKINE

Query:  GMQLCLDASCKLVKIMRSCLKES
           L  +    + + +R  L+E+
Subjt:  GMQLCLDASCKLVKIMRSCLKES

AT3G61620.2 3'-5'-exoribonuclease family protein2.7e-2130.04Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMFSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMFSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTITGEWSTAKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D  + E++    ++ +  +P   +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTITGEWSTAKINE

Query:  GMQLCLDASCKLVKIMRSCLKES
           L  +    + + +R  L+E+
Subjt:  GMQLCLDASCKLVKIMRSCLKES

AT4G27490.1 3'-5'-exoribonuclease family protein3.5e-10672.76Show/hide
Query:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT
        MA K    T TYSP     ++R PIF+  D+DW RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM++SD+GRLNC+VSYT 
Subjt:  MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DG+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGN

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE
         M+TCMPSRYE+TQLTITGEW+T  INE MQLCLDAS KL +IMR CLK+SA+ S+E
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAAAGCGACCCCAGTTACGACTACGTATTCTCCGTCTCCTACTACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGACGTCGACTGGGTTCGCCCGGA
TGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCGTCAGGATCTGCATATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTG
TATTTGGCCCGAGAGAAAGTAAGAAAGCAATGATGTTCAGTGATATTGGCCGGCTCAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGTTCA
GAAAACAAGGAGTTCTCCTCAATGCTACACAAAGCTTTGGAAGGGGCAATTATCTTGGAGACATTCCCCAAGACAACTGTGGATGTATTTGCCTTGGTGTTGGAATCTGG
AGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCAGGGATTATGCTTTATGATCTCGTTGCCTCAGTTTCTGTGAGCTGCTTTGGGAAGA
ATCTTCTTATTGATCCTTTGTTCGAAGAGGAAAACTACCAAGATGGAAATCTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACCGGGGAA
TGGTCAACTGCTAAAATTAATGAGGGTATGCAGCTTTGCCTTGATGCTTCGTGTAAGCTTGTGAAGATCATGCGGTCATGCTTGAAGGAATCTGCCACCGTTTCAGAGGA
ATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAAAAAGCGACCCCAGTTACGACTACGTATTCTCCGTCTCCTACTACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGACGTCGACTGGGTTCGCCCGGA
TGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCGTCAGGATCTGCATATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTG
TATTTGGCCCGAGAGAAAGTAAGAAAGCAATGATGTTCAGTGATATTGGCCGGCTCAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGTTCA
GAAAACAAGGAGTTCTCCTCAATGCTACACAAAGCTTTGGAAGGGGCAATTATCTTGGAGACATTCCCCAAGACAACTGTGGATGTATTTGCCTTGGTGTTGGAATCTGG
AGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCAGGGATTATGCTTTATGATCTCGTTGCCTCAGTTTCTGTGAGCTGCTTTGGGAAGA
ATCTTCTTATTGATCCTTTGTTCGAAGAGGAAAACTACCAAGATGGAAATCTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACCGGGGAA
TGGTCAACTGCTAAAATTAATGAGGGTATGCAGCTTTGCCTTGATGCTTCGTGTAAGCTTGTGAAGATCATGCGGTCATGCTTGAAGGAATCTGCCACCGTTTCAGAGGA
ATGA
Protein sequenceShow/hide protein sequence
MAKKATPVTTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMFSDIGRLNCSVSYTTFSTPVRGQGS
ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPLFEEENYQDGNLMITCMPSRYEVTQLTITGE
WSTAKINEGMQLCLDASCKLVKIMRSCLKESATVSEE