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Lag0010300 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010300
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationchr9:46196736..46197173
RNA-Seq ExpressionLag0010300
SyntenyLag0010300
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]1.4e-3281.31Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PS+ ARRPL+VAKAST N ASN N+E+KNVKVE+R QGRRELVAAAVTVAAA+LAK AMADEP  GSPEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]8.5e-3571.32Show/hide
Query:  ISSFFFLTHSLNNQSLTNTQTPNSSKSLNMASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAAS
        I+   FL H +  Q + N   PN S  LNMASMAMTASFLP  A K PSA  RR L+VAKAST N+ SN NLE+KNVKVE+R QGRRELVAAAVTVAAA+
Subjt:  ISSFFFLTHSLNNQSLTNTQTPNSSKSLNMASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAAS

Query:  LAKVAMADEPKPGSPEAKQKYAVVCVTMPTARICRK
        LAK AMADEP  GSPEAKQKYA +CVTMPTARICRK
Subjt:  LAKVAMADEPKPGSPEAKQKYAVVCVTMPTARICRK

XP_022148791.1 photosystem II 5 kDa protein, chloroplastic [Momordica charantia]1.2e-2575.93Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAS--TNDASNANLEM-KNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVT
        MAS A+ ASFLP+  AKHPSAA RR L+VAKAS   NDAS  NLEM ++V+VE+  QGRRELVAAAVTVAAA+LAK AMADEPK GS EAKQKYA VCVT
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAS--TNDASNANLEM-KNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVT

Query:  MPTARICR
        MPTARICR
Subjt:  MPTARICR

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]4.2e-2672.07Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVC
        MASM++TASFLP  A +  +AAARR L V KAST+ A     SNANLE+KNVKVE+  QGRRELVAAAVTVAAA+ AK AMADEP  GS EAKQKYA +C
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVC

Query:  VTMPTARICRK
        VTMPTARICRK
Subjt:  VTMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]8.0e-3384.11Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PS AARR LVVAKAST +DASN NLE+KNVKVENR QGRRELVAAAVTVAAA+LAK AMADEP  GSPEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein6.6e-3381.31Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PS+ ARRPL+VAKAST N ASN N+E+KNVKVE+R QGRRELVAAAVTVAAA+LAK AMADEP  GSPEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic4.1e-3571.32Show/hide
Query:  ISSFFFLTHSLNNQSLTNTQTPNSSKSLNMASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAAS
        I+   FL H +  Q + N   PN S  LNMASMAMTASFLP  A K PSA  RR L+VAKAST N+ SN NLE+KNVKVE+R QGRRELVAAAVTVAAA+
Subjt:  ISSFFFLTHSLNNQSLTNTQTPNSSKSLNMASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAAS

Query:  LAKVAMADEPKPGSPEAKQKYAVVCVTMPTARICRK
        LAK AMADEP  GSPEAKQKYA +CVTMPTARICRK
Subjt:  LAKVAMADEPKPGSPEAKQKYAVVCVTMPTARICRK

A0A5A7TID9 Photosystem II 5 kDa protein4.1e-3571.32Show/hide
Query:  ISSFFFLTHSLNNQSLTNTQTPNSSKSLNMASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAAS
        I+   FL H +  Q + N   PN S  LNMASMAMTASFLP  A K PSA  RR L+VAKAST N+ SN NLE+KNVKVE+R QGRRELVAAAVTVAAA+
Subjt:  ISSFFFLTHSLNNQSLTNTQTPNSSKSLNMASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAAS

Query:  LAKVAMADEPKPGSPEAKQKYAVVCVTMPTARICRK
        LAK AMADEP  GSPEAKQKYA +CVTMPTARICRK
Subjt:  LAKVAMADEPKPGSPEAKQKYAVVCVTMPTARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic2.1e-2672.07Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVC
        MASM++TASFLP  A +  +AAARR L V KAST+ A     SNANLE+KNVKVE+  QGRRELVAAAVTVAAA+ AK AMADEP  GS EAKQKYA +C
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVC

Query:  VTMPTARICRK
        VTMPTARICRK
Subjt:  VTMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic2.1e-2672.07Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVC
        MASM++TASFLP  A +  +AAARR L V KAST+ A     SNANLE+KNVKVE+  QGRRELVAAAVTVAAA+ AK AMADEP  GS EAKQKYA +C
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVC

Query:  VTMPTARICRK
        VTMPTARICRK
Subjt:  VTMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic2.5e-1352.29Show/hide
Query:  MASMAMTASFL---PVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMAD-EPKPGSPEAKQKYAVVCV
        MAS+ M +SFL    VA AK PS A RR +V+ KA     +N  +       E++  GRREL  A    AA S+AK AMAD EPK G+PEAK+KY+ VCV
Subjt:  MASMAMTASFL---PVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMAD-EPKPGSPEAKQKYAVVCV

Query:  TMPTARICR
        T PTARICR
Subjt:  TMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic5.8e-1048.11Show/hide
Query:  MASMAMTASFLPVA-AAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVTMP
        MAS+ MT SFL      K      +R LVVA A+   A   +++M   +      GRRE++ AA   A  S+A VA A EPK GS EAK+ YA VCVTMP
Subjt:  MASMAMTASFLPVA-AAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGSPEAKQKYAVVCVTMP

Query:  TARICR
        TARICR
Subjt:  TARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic7.8e-1554.21Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA--DEPKPGSPEAKQKYAVVCVTM
        MASM MTA+F P A AK PSA   R L V +AST+D    N     VK ++    RR+L+  A   A  SLAKVAMA  +EPK G+  AK+KYA VCVTM
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA--DEPKPGSPEAKQKYAVVCVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein1.6e-1552.78Show/hide
Query:  MASMAMTASFLPVAA--AKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA-DEPKPGSPEAKQKYAVVCVT
        MASM MT+SFLP  +    + S+ +RR L V KAS    S     ++N K E   + RR+LV  A   A  SLAKVAMA DEPK G+  AK+KYA VCVT
Subjt:  MASMAMTASFLPVAA--AKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA-DEPKPGSPEAKQKYAVVCVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR

AT3G21055.1 photosystem II subunit T5.5e-1654.21Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA--DEPKPGSPEAKQKYAVVCVTM
        MASM MTA+F P A AK PSA   R L V +AST+D    N     VK ++    RR+L+  A   A  SLAKVAMA  +EPK G+  AK+KYA VCVTM
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA--DEPKPGSPEAKQKYAVVCVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCTTGAATCAATTCAAAACATAACTATATCCTCCTTCTTCTTCCTCACCCATTCTCTCAACAATCAATCTCTCACAAACACACAAACCCCAAATTCCTCCAAATC
CCTAAATATGGCCTCCATGGCTATGACAGCCTCCTTCCTCCCCGTCGCCGCCGCCAAGCACCCCTCCGCCGCTGCTCGGAGACCCCTCGTCGTCGCCAAGGCCTCCACCA
ACGACGCCTCTAACGCCAACTTGGAGATGAAGAATGTCAAGGTGGAGAACAGGCAGCAGGGGCGGCGGGAGTTGGTGGCAGCCGCTGTGACGGTGGCGGCGGCCAGCTTG
GCCAAGGTAGCAATGGCGGACGAGCCCAAGCCCGGCTCCCCTGAAGCCAAGCAAAAGTATGCCGTTGTGTGCGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCTTGAATCAATTCAAAACATAACTATATCCTCCTTCTTCTTCCTCACCCATTCTCTCAACAATCAATCTCTCACAAACACACAAACCCCAAATTCCTCCAAATC
CCTAAATATGGCCTCCATGGCTATGACAGCCTCCTTCCTCCCCGTCGCCGCCGCCAAGCACCCCTCCGCCGCTGCTCGGAGACCCCTCGTCGTCGCCAAGGCCTCCACCA
ACGACGCCTCTAACGCCAACTTGGAGATGAAGAATGTCAAGGTGGAGAACAGGCAGCAGGGGCGGCGGGAGTTGGTGGCAGCCGCTGTGACGGTGGCGGCGGCCAGCTTG
GCCAAGGTAGCAATGGCGGACGAGCCCAAGCCCGGCTCCCCTGAAGCCAAGCAAAAGTATGCCGTTGTGTGCGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA
Protein sequenceShow/hide protein sequence
MNLESIQNITISSFFFLTHSLNNQSLTNTQTPNSSKSLNMASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASL
AKVAMADEPKPGSPEAKQKYAVVCVTMPTARICRK