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Lag0010313 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010313
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionheterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
Genome locationchr9:46286995..46287525
RNA-Seq ExpressionLag0010313
SyntenyLag0010313
Gene Ontology termsGO:0008299 - isoprenoid biosynthetic process (biological process)
GO:0004659 - prenyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON33651.1 Polyprenyl synthetase-related [Parasponia andersonii]1.7e-2163.33Show/hide
Query:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        ++L SSS+L+LP +  N I P  CS+ SSS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKRAPP+
Subjt:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

PON40297.1 Polyprenyl synthetase-related [Trema orientale]1.7e-2163.33Show/hide
Query:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        ++L SSS+L+LP +  N I P  CS+ SSS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKRAPP+
Subjt:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

XP_008348939.2 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Malus domestica]6.1e-1956.38Show/hide
Query:  MALPTMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        MA  +M+ +SS L++P+K   L  P  CSS SSS S+ST+S S++FDLKTYW  LIA +N+ L EA+ +RYP +IY++MRYSVLA+GAKRA P+
Subjt:  MALPTMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

XP_022140742.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Momordica charantia]2.9e-2981.05Show/hide
Query:  MALPTMLLSSSNL-HLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        MALPTMLLSSSNL HL  K PNLI P  C   SSSASVS RS S+ FDLKTYW KLI+QINRSLDEAVSV+YPA+IYEAMRYSVLAEGAKRAPPI
Subjt:  MALPTMLLSSSNL-HLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

XP_030483625.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cannabis sativa]2.7e-1961.11Show/hide
Query:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        ++L SSS L+LP K  N I P  CSSP    S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKR+PP+
Subjt:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

TrEMBL top hitse value%identityAlignment
A0A2P5AAU1 Polyprenyl synthetase-related8.3e-2263.33Show/hide
Query:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        ++L SSS+L+LP +  N I P  CS+ SSS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKRAPP+
Subjt:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

A0A2P5AUQ9 Polyprenyl synthetase-related8.3e-2263.33Show/hide
Query:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        ++L SSS+L+LP +  N I P  CS+ SSS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKRAPP+
Subjt:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

A0A6J1CHX6 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic1.4e-2981.05Show/hide
Query:  MALPTMLLSSSNL-HLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        MALPTMLLSSSNL HL  K PNLI P  C   SSSASVS RS S+ FDLKTYW KLI+QINRSLDEAVSV+YPA+IYEAMRYSVLAEGAKRAPPI
Subjt:  MALPTMLLSSSNL-HLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

A0A7J6DWV3 Uncharacterized protein1.3e-1961.11Show/hide
Query:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        ++L SSS L+LP K  N I P  CSSP    S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKR+PP+
Subjt:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

A0A803NQV3 Uncharacterized protein1.3e-1961.11Show/hide
Query:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        ++L SSS L+LP K  N I P  CSSP    S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKR+PP+
Subjt:  TMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

SwissProt top hitse value%identityAlignment
A0A0U3BRC5 Geranylfarnesyl diphosphate synthase, chloroplastic1.0e-0542.25Show/hide
Query:  SPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        S F  S  + S        + QFD K Y ++ I  +N++LD A+ VR P +I+EAMRYS+L  G KR  PI
Subjt:  SPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

P34802 Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic3.4e-0434.91Show/hide
Query:  PTMLLSSSNLHLPRKCP-NLISPFHCSSP---SSSASVSTRSISVQ-----------FDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGA
        P+ +L+ S     R CP  L  P    S    SSS+S+ + S+  +           FD  +Y +     +N++LD AV +R P +I+EAMRYS+LA G 
Subjt:  PTMLLSSSNLHLPRKCP-NLISPFHCSSP---SSSASVSTRSISVQ-----------FDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGA

Query:  KRAPPI
        KR  P+
Subjt:  KRAPPI

Q39108 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic1.1e-1556.96Show/hide
Query:  PRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        P   P  +SP    S SSSA       S+ FDL+TYW  LI +IN+ LDEA+ V++PA IYEAMRYSVLA+GAKRAPP+
Subjt:  PRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

Q42698 Geranylgeranyl pyrophosphate synthase, chloroplastic8.9e-0543.08Show/hide
Query:  SPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        S S S      S S  FD K Y +     +N++L++AV VR P +I+E+MRYS+LA G KR  P+
Subjt:  SPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

Q43133 Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic3.6e-0636.63Show/hide
Query:  PTMLLSSSNLHLPRKC----PNLISPFHCSSPSSSASVST------RSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPP
        P+ +L+ S    P       P  ++P    S SSS+S+ T      +S S  FD  +Y ++    +N++LD AV +R P +I+EAMRYS+LA G KR  P
Subjt:  PTMLLSSSNLHLPRKC----PNLISPFHCSSPSSSASVST------RSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPP

Query:  I
        +
Subjt:  I

Arabidopsis top hitse value%identityAlignment
AT2G18620.1 Terpenoid synthases superfamily protein2.4e-0542.42Show/hide
Query:  SSSASVSTRS---ISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        S+  SV+ R    I   FD  +Y +     +N +LD AVS+R P +I+EA+RYS+LA G KR  P+
Subjt:  SSSASVSTRS---ISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

AT2G23800.1 geranylgeranyl pyrophosphate synthase 21.6e-0441.38Show/hide
Query:  VSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        VS  + + +FD   Y +     +N++L+EA+ V  P +I+EAMRY++LA G KR  PI
Subjt:  VSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

AT3G14550.1 geranylgeranyl pyrophosphate synthase 32.0e-0442.86Show/hide
Query:  FDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        FD K Y ++    +N +LD +V +R P  + EA+RYS+LA G KR  P+
Subjt:  FDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

AT4G36810.1 geranylgeranyl pyrophosphate synthase 12.4e-0534.91Show/hide
Query:  PTMLLSSSNLHLPRKCP-NLISPFHCSSP---SSSASVSTRSISVQ-----------FDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGA
        P+ +L+ S     R CP  L  P    S    SSS+S+ + S+  +           FD  +Y +     +N++LD AV +R P +I+EAMRYS+LA G 
Subjt:  PTMLLSSSNLHLPRKCP-NLISPFHCSSP---SSSASVSTRSISVQ-----------FDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGA

Query:  KRAPPI
        KR  P+
Subjt:  KRAPPI

AT4G38460.1 geranylgeranyl reductase7.9e-1756.96Show/hide
Query:  PRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        P   P  +SP    S SSSA       S+ FDL+TYW  LI +IN+ LDEA+ V++PA IYEAMRYSVLA+GAKRAPP+
Subjt:  PRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTACCTACAATGTTGCTCTCATCTTCCAATCTTCATCTCCCACGAAAATGCCCCAATCTTATCTCCCCATTTCACTGTTCTTCTCCTTCTTCTTCAGCCTCCGT
TTCTACTCGATCCATATCGGTCCAGTTTGATCTGAAAACGTATTGGGTGAAATTGATCGCCCAGATTAATCGGAGTCTCGATGAAGCCGTTTCGGTTCGGTATCCGGCAG
AGATCTACGAGGCTATGCGATACTCCGTCTTGGCCGAGGGGGCCAAGCGAGCCCCGCCGATTAGAGGAAATCAAATCGCCGGAGAGTTCTGCCGGAGAGTTCTGCGACTC
GGATTGTACGAGAATAGGGGAAATCAAATCGAAGAACGACTTGACGACGAAATGATAGAAATCAAAATGAAGGTTGAAATCGTGAGGGAAATGAAATGGAGAATACGAAA
GAATGAAGAAGACGTGAGATGGAGAAGAAGACCGATGGAGATGACCGGAAAAGTAGAGAAGAAATGGAAGCCAATAGAAAGGGCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTACCTACAATGTTGCTCTCATCTTCCAATCTTCATCTCCCACGAAAATGCCCCAATCTTATCTCCCCATTTCACTGTTCTTCTCCTTCTTCTTCAGCCTCCGT
TTCTACTCGATCCATATCGGTCCAGTTTGATCTGAAAACGTATTGGGTGAAATTGATCGCCCAGATTAATCGGAGTCTCGATGAAGCCGTTTCGGTTCGGTATCCGGCAG
AGATCTACGAGGCTATGCGATACTCCGTCTTGGCCGAGGGGGCCAAGCGAGCCCCGCCGATTAGAGGAAATCAAATCGCCGGAGAGTTCTGCCGGAGAGTTCTGCGACTC
GGATTGTACGAGAATAGGGGAAATCAAATCGAAGAACGACTTGACGACGAAATGATAGAAATCAAAATGAAGGTTGAAATCGTGAGGGAAATGAAATGGAGAATACGAAA
GAATGAAGAAGACGTGAGATGGAGAAGAAGACCGATGGAGATGACCGGAAAAGTAGAGAAGAAATGGAAGCCAATAGAAAGGGCATTTTAG
Protein sequenceShow/hide protein sequence
MALPTMLLSSSNLHLPRKCPNLISPFHCSSPSSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPIRGNQIAGEFCRRVLRL
GLYENRGNQIEERLDDEMIEIKMKVEIVREMKWRIRKNEEDVRWRRRPMEMTGKVEKKWKPIERAF