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Lag0010428 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010428
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:47192382..47193179
RNA-Seq ExpressionLag0010428
SyntenyLag0010428
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]4.3e-0729.33Show/hide
Query:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHS-----------
        W  P P  YK+N  AA S      GI  +  NS GEVM   +  + F +D++ +EA+AV +GL +V D+ ++   +E+DS  V  LI++           
Subjt:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHS-----------

Query:  ---IWRIFQRSEP------------------AKLTVSDDVNGVWLEDVPT
           +  +   SE                   +KL + + +  VWLE+VPT
Subjt:  ---IWRIFQRSEP------------------AKLTVSDDVNGVWLEDVPT

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]3.7e-0639.08Show/hide
Query:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALI
        W PP  P  K+N  AA  +ES   G+  I R+S G V LT +R ++   DVD +E  AV +G+L+  +    R ++ETDS R+  L+
Subjt:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALI

XP_024033533.1 uncharacterized protein LOC112095662 [Citrus clementina]3.7e-0638.46Show/hide
Query:  KNWVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHS
        + W PP     K+N  AA   ESQ  G+ A+ RNS+G+V++  V+ I+F  DV  +EA AV+ GL +      + + VETD + VA L ++
Subjt:  KNWVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHS

XP_024037110.1 uncharacterized protein LOC112097050 [Citrus clementina]2.2e-0637.93Show/hide
Query:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALI
        W PP PP YKLN+ AA  +E    G+  I RN +G VM  +     +  DV+  EA+A+ +GL +  +V +S   +E+DS  V   I
Subjt:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALI

XP_024042628.1 uncharacterized protein LOC112099434 [Citrus clementina]1.6e-0632.56Show/hide
Query:  KNWVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHS-------IW
        K W+PP P  +K+N  AA  +E   +G+ A+ R++ G ++   V+   F  +V   EA AVR GL +  D  ++ L +ETDS  VA LI++       I+
Subjt:  KNWVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHS-------IW

Query:  RIFQRSEPAKLTVSDDVNGVWLEDVPTGL
         + QR +   L +S  ++ +  +D+ T L
Subjt:  RIFQRSEPAKLTVSDDVNGVWLEDVPTGL

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)1.0e-0637.93Show/hide
Query:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALI
        W PP PP YKLN+ AA  +E    G+  I RN +G VM  +     +  DV+  EA+A+ +GL +  +V +S   +E+DS  V   I
Subjt:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALI

A0A2N9E9A1 Reverse transcriptase domain-containing protein4.7e-0734.44Show/hide
Query:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHSI
        W PP P  YK+N   A  RES   GI AI RN +GEVM  + + I +   ++++EA A +  +  V D+ +  +++E DS ++   +  I
Subjt:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHSI

A0A2N9GZI9 Reverse transcriptase domain-containing protein1.8e-0636.14Show/hide
Query:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARV
        W PP P  YK+N   A  RES   GI AI RN +GEVM  + + I +   ++++EA A +  +  V D+ +  +++E DS ++
Subjt:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARV

A0A6J1DBJ7 uncharacterized protein LOC1110189731.8e-0639.08Show/hide
Query:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALI
        W PP  P  K+N  AA  +ES   G+  I R+S G V LT +R ++   DVD +E  AV +G+L+  +    R ++ETDS R+  L+
Subjt:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALI

V4UMR3 RNase H domain-containing protein (Fragment)2.1e-0729.33Show/hide
Query:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHS-----------
        W  P P  YK+N  AA S      GI  +  NS GEVM   +  + F +D++ +EA+AV +GL +V D+ ++   +E+DS  V  LI++           
Subjt:  WVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVRDVEMSRLEVETDSARVAALIHS-----------

Query:  ---IWRIFQRSEP------------------AKLTVSDDVNGVWLEDVPT
           +  +   SE                   +KL + + +  VWLE+VPT
Subjt:  ---IWRIFQRSEP------------------AKLTVSDDVNGVWLEDVPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCCTTTTACCCAATTCCAGGACTTAAGTCTATAAGGACCGCAACAGATTTGGTGAGGTGGGTTTGGGAGAAAATGTCGACTGTGCTGTTTGAGGATTTCGTAGG
ATTGTGCTGGGGGAAGAATTGGGTTCCTCCAATTCCGCCTAACTACAAGTTAAATTCATATGCGGCTGCAAGCAGAGAGTCCCAAACAAATGGTATTGCAGCAATAACTA
GGAACAGTAAAGGAGAGGTTATGCTTACCATGGTGAGGCCGATTTCCTTTGTACAAGATGTTGATTCTCTTGAAGCCATGGCAGTGAGGGATGGCTTATTGATGGTGAGG
GATGTCGAGATGTCGAGACTGGAGGTGGAGACGGATTCAGCTCGTGTAGCGGCGCTCATTCACTCGATTTGGAGGATTTTCCAGAGGTCGGAGCCCGCCAAGCTAACAGT
GAGCGACGACGTCAATGGAGTGTGGCTGGAGGACGTTCCGACGGGGTTAGAAGACGAGTATGGTTTAGAGGTTTTGGACAACCCTTCTTGTTCATCGAGGGGCTCTGTCC
GTGAGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCACCCTTTTACCCAATTCCAGGACTTAAGTCTATAAGGACCGCAACAGATTTGGTGAGGTGGGTTTGGGAGAAAATGTCGACTGTGCTGTTTGAGGATTTCGTAGG
ATTGTGCTGGGGGAAGAATTGGGTTCCTCCAATTCCGCCTAACTACAAGTTAAATTCATATGCGGCTGCAAGCAGAGAGTCCCAAACAAATGGTATTGCAGCAATAACTA
GGAACAGTAAAGGAGAGGTTATGCTTACCATGGTGAGGCCGATTTCCTTTGTACAAGATGTTGATTCTCTTGAAGCCATGGCAGTGAGGGATGGCTTATTGATGGTGAGG
GATGTCGAGATGTCGAGACTGGAGGTGGAGACGGATTCAGCTCGTGTAGCGGCGCTCATTCACTCGATTTGGAGGATTTTCCAGAGGTCGGAGCCCGCCAAGCTAACAGT
GAGCGACGACGTCAATGGAGTGTGGCTGGAGGACGTTCCGACGGGGTTAGAAGACGAGTATGGTTTAGAGGTTTTGGACAACCCTTCTTGTTCATCGAGGGGCTCTGTCC
GTGAGATTTAG
Protein sequenceShow/hide protein sequence
MSPFYPIPGLKSIRTATDLVRWVWEKMSTVLFEDFVGLCWGKNWVPPIPPNYKLNSYAAASRESQTNGIAAITRNSKGEVMLTMVRPISFVQDVDSLEAMAVRDGLLMVR
DVEMSRLEVETDSARVAALIHSIWRIFQRSEPAKLTVSDDVNGVWLEDVPTGLEDEYGLEVLDNPSCSSRGSVREI