; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010471 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010471
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:47536226..47536654
RNA-Seq ExpressionLag0010471
SyntenyLag0010471
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015384866.1 uncharacterized protein LOC107176592 [Citrus sinensis]5.7e-0831.43Show/hide
Query:  TQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQANDQRV-------W--------------VECDAFQVVKLVSGLENDKTEL
        +Q+WCP P  V+K + DA  N  +G  G+G ++R+S  R I A ++    + D +V       W              VE D   V KL++  E  KTE+
Subjt:  TQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQANDQRV-------W--------------VECDAFQVVKLVSGLENDKTEL

Query:  INFIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES
        +  I E Q         +  Y PR+ N  AH LA  A+ S
Subjt:  INFIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.0e-0929.71Show/hide
Query:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISA---------------------GLRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELIN
        +W P  +  WKL+ +A W      GG+GWILR+ KG  I A                     GLRAI Q + + + +E D+ + + L+     D+TE+I 
Subjt:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISA---------------------GLRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELIN

Query:  FIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES
         ++E   ++    I ++ ++ R  N +AH LA +A+E+
Subjt:  FIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.5e-0832.23Show/hide
Query:  TQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAG-LRAIPQA----NDQRVWVECDAFQVVKLVSGLENDKTELINFIKEAQSLITTNNI
        T  W P    +WKL+ DATW +    GG+GWI+R+S+GR I A  L+A+ Q+       ++ +E D  +VV +++      TE+   +++    + +  I
Subjt:  TQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAG-LRAIPQA----NDQRVWVECDAFQVVKLVSGLENDKTELINFIKEAQSLITTNNI

Query:  EAVVYVPRNNNGMAHFLAHKA
        E   ++P   NG+AH +A +A
Subjt:  EAVVYVPRNNNGMAHFLAHKA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-0829.45Show/hide
Query:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISA---------------------GLRA--------IPQANDQRVWVECDAFQVVKLVSGLE
        RW P  +  WKL+ DA W      GG+GWILR+ KG  I A                     GLRA        I Q + + + +E D+ + + L+    
Subjt:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISA---------------------GLRA--------IPQANDQRVWVECDAFQVVKLVSGLE

Query:  NDKTELINFIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES
         D+TE+I  ++E   ++    I ++ ++ R  N +AH LA +A+E+
Subjt:  NDKTELINFIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES

XP_024047996.1 uncharacterized protein LOC112101553 [Citrus clementina]5.7e-0831.43Show/hide
Query:  TQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQANDQRV-------W--------------VECDAFQVVKLVSGLENDKTEL
        +Q+WCP P  V+K + DA  N  +G  G+G ++R+S  R I A ++    + D +V       W              VE D   V KL++  E  KTE+
Subjt:  TQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQANDQRV-------W--------------VECDAFQVVKLVSGLENDKTEL

Query:  INFIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES
        +  I E Q         +  Y PR+ N  AH LA  A+ S
Subjt:  INFIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.0e-1029.71Show/hide
Query:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISA---------------------GLRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELIN
        +W P  +  WKL+ +A W      GG+GWILR+ KG  I A                     GLRAI Q + + + +E D+ + + L+     D+TE+I 
Subjt:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISA---------------------GLRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELIN

Query:  FIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES
         ++E   ++    I ++ ++ R  N +AH LA +A+E+
Subjt:  FIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES

A0A6J1D4B6 uncharacterized protein LOC1110171811.2e-0832.23Show/hide
Query:  TQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAG-LRAIPQA----NDQRVWVECDAFQVVKLVSGLENDKTELINFIKEAQSLITTNNI
        T  W P    +WKL+ DATW +    GG+GWI+R+S+GR I A  L+A+ Q+       ++ +E D  +VV +++      TE+   +++    + +  I
Subjt:  TQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAG-LRAIPQA----NDQRVWVECDAFQVVKLVSGLENDKTELINFIKEAQSLITTNNI

Query:  EAVVYVPRNNNGMAHFLAHKA
        E   ++P   NG+AH +A +A
Subjt:  EAVVYVPRNNNGMAHFLAHKA

A0A6J1D5W1 uncharacterized protein LOC1110173291.8e-0725Show/hide
Query:  PTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQAND------QRVW---------------VECDAFQVVKLVSGLENDKTELINFIKEA
        P   WKL+ DA W+  QG GG+GWI+R  K     AG + I  A D        +W               +E ++ + + L+ G++ + TE++  +++ 
Subjt:  PTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQAND------QRVW---------------VECDAFQVVKLVSGLENDKTELINFIKEA

Query:  QSLITTNNIEAVVYVPRNNNGMAHFLAHKAVE
        ++      ++   +V R+ N +A  +A++A +
Subjt:  QSLITTNNIEAVVYVPRNNNGMAHFLAHKAVE

A0A6J1DSV1 uncharacterized protein LOC1110236085.5e-0929.45Show/hide
Query:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISA---------------------GLRA--------IPQANDQRVWVECDAFQVVKLVSGLE
        RW P  +  WKL+ DA W      GG+GWILR+ KG  I A                     GLRA        I Q + + + +E D+ + + L+    
Subjt:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISA---------------------GLRA--------IPQANDQRVWVECDAFQVVKLVSGLE

Query:  NDKTELINFIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES
         D+TE+I  ++E   ++    I ++ ++ R  N +AH LA +A+E+
Subjt:  NDKTELINFIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVES

A0A6J5UAY2 Reverse transcriptase domain-containing protein2.0e-0629.01Show/hide
Query:  WCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAG---------------------LRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELINF
        W   P GV K++CDA W      GGVGW++R+S G  + AG                     L A  Q+   ++ VE D+ QV++++ G  N    +   
Subjt:  WCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAG---------------------LRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELINF

Query:  IKEAQSLITTNNIEAVVYVPRNNNGMAHFLA
        + + + L+        +Y PRN N  AH +A
Subjt:  IKEAQSLITTNNIEAVVYVPRNNNGMAHFLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.3e-0430.53Show/hide
Query:  MTQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELINFIKEAQSLITTNN
        ++ +W   P    K + DATW       G+GWILR   G  +  G RA+P+  +  +  E +A +   L     N K   I F  +AQ+L+   N
Subjt:  MTQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELINFIKEAQSLITTNN

AT4G29090.1 Ribonuclease H-like superfamily protein3.3e-0628.15Show/hide
Query:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQAN-------DQRVW--VECDAFQV---------VKLVSGLENDK--TELINF
        RW P P    K + DATWN      G+GW+LR  KG     G RA+P+         +   W  +    FQ            L+  L ND+    L   
Subjt:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQAN-------DQRVW--VECDAFQV---------VKLVSGLENDK--TELINF

Query:  IKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAV
        I++ Q L++       V++PR  N +A  +A +++
Subjt:  IKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAV

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.0e-0424.09Show/hide
Query:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAG---------------------LRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELIN
        +W P      K + DA+ +E     G+GWILR S+G  I  G                     ++A      ++V  E D   + ++++  ++    L +
Subjt:  RWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAG---------------------LRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELIN

Query:  FIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVE
        F+   QS I +       +  R  NG A FLA +A++
Subjt:  FIKEAQSLITTNNIEAVVYVPRNNNGMAHFLAHKAVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCAACGGTGGTGTCCTGTTCCGACTGGTGTGTGGAAACTTAGCTGCGACGCGACATGGAATGAGGGGCAAGGTTGTGGTGGAGTCGGTTGGATTCTTAGGGAATC
GAAAGGGCGGCCGATTTCTGCAGGTCTTAGGGCAATCCCTCAGGCGAACGATCAGCGGGTGTGGGTAGAGTGTGATGCCTTTCAGGTGGTTAAACTGGTTAGTGGGTTGG
AGAATGATAAAACTGAGTTAATCAATTTTATCAAAGAAGCTCAATCTCTCATCACAACAAATAATATTGAAGCGGTAGTTTATGTCCCTCGTAATAATAATGGGATGGCC
CATTTCCTGGCCCATAAGGCTGTTGAGAGTAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACCCAACGGTGGTGTCCTGTTCCGACTGGTGTGTGGAAACTTAGCTGCGACGCGACATGGAATGAGGGGCAAGGTTGTGGTGGAGTCGGTTGGATTCTTAGGGAATC
GAAAGGGCGGCCGATTTCTGCAGGTCTTAGGGCAATCCCTCAGGCGAACGATCAGCGGGTGTGGGTAGAGTGTGATGCCTTTCAGGTGGTTAAACTGGTTAGTGGGTTGG
AGAATGATAAAACTGAGTTAATCAATTTTATCAAAGAAGCTCAATCTCTCATCACAACAAATAATATTGAAGCGGTAGTTTATGTCCCTCGTAATAATAATGGGATGGCC
CATTTCCTGGCCCATAAGGCTGTTGAGAGTAAATAG
Protein sequenceShow/hide protein sequence
MTQRWCPVPTGVWKLSCDATWNEGQGCGGVGWILRESKGRPISAGLRAIPQANDQRVWVECDAFQVVKLVSGLENDKTELINFIKEAQSLITTNNIEAVVYVPRNNNGMA
HFLAHKAVESK