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Lag0010561 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010561
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr1:1145705..1151641
RNA-Seq ExpressionLag0010561
SyntenyLag0010561
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-0759.62Show/hide
Query:  GRFESSHLRS-WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        G  ES  LR  ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  GRFESSHLRS-WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.0e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0067076.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-0755.38Show/hide
Query:  SSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKE
        SS L+  VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L          LFIRGAL+ K+
Subjt:  SSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKE
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-0755.38Show/hide
Query:  SSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKE
        SS L+  VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L          LFIRGAL+ K+
Subjt:  SSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKE
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.4e-0959.32Show/hide
Query:  GRFESSHLRS-WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKW
        G  ES  LR  ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+C L+W
Subjt:  GRFESSHLRS-WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKW
TrEMBL top hitse value%identityAlignment
A0A5A7TKJ4 Gag/pol protein3.2e-0759.62Show/hide
Query:  GRFESSHLRS-WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        G  ES  LR  ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  GRFESSHLRS-WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein1.5e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7VKV9 Gag/pol protein8.5e-0855.38Show/hide
Query:  SSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKE
        SS L+  VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L          LFIRGAL+ K+
Subjt:  SSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKE
A0A5D3DRR2 Gag/pol protein8.5e-0855.38Show/hide
Query:  SSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKE
        SS L+  VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L          LFIRGAL+ K+
Subjt:  SSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKE
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-947.0e-1059.32Show/hide
Query:  GRFESSHLRS-WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKW
        G  ES  LR  ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+C L+W
Subjt:  GRFESSHLRS-WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGGTTAGCTTTTGACTTGCTCGTAGACTACATGCACAAGGCCTTGTTAGAGATTTGGCCACTACTAGCAAAAGACAAGGAGATGACTACACAATTTTTCGAACC
ATTCATTGGTGTCGAGGAAAGTTTGAGGCGTGAATTTCGAGACCAGTTGGATGCAGAGCATCCTACACAAAATATAGCCGAGTTGACATTTAACAGGAGTGTCGCCTCGA
TGATCGATATTAAACACATTAGAGAAGCCTTGGATCTGATGACAGAAAGGCATGAAATAGAATGCGATGATGAAGAAGATGAGCATGTTGACGATTATAGGATTTCAAGT
TGCGAAAAAACCACGCCCCAGAAGCATCATTCTCTGAATCTACAATGGAAAAGGCCAGGGGGACGATTTGAGAGTTCTCATCTAAGGTCATGGGTGAGAGTGGCCAATAC
GCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGT
GTTTCCTTAAGTGGTTGTTCATTAGAGGAGCGCTGGTACTTAAGGAGACAGATGTAACACAGGGCATCGTAGACGCCAGTGGGCAGCGTCGAGATGCTACGGATATTTCA
ATCCAAGATGTTTTCGCGCTGGCATCTCGACGGCTCAATTATTCGGTTCTTGGCGTCATAATTCAGGCCCGCTTCAGTACAATTGGGTCTTTTCACCTCCTTGTCGTTCA
AGACATCGAGATGGCTCCAAAACTCTTAATGGCCCAAATTAGCACCAAATTAATACCCCGTGAATCTCAGAATTCTATCGAAAAGAACAGTTGCGGTCGCAAATCGGGTA
CAAAATCTCTGTGCACTGTCTTGACACTTCTGTCTTCAGCTTGGGTTGTTTTCCTTATAAGCGATGATTCAGACGGGGAGGGTGGCGACGACGATGCTCAACAGAAGGAG
GAGAGATACAGATCCACGACCACAAACCACGGGGAGAGGAGGGACTCGCGCAAAGGAGAGAAACGCAACGGCGACTCGGGCTGGGTGAAGCCGACGATGCTGCTATTGTT
GGCACGAGGGTGGCGACGCTTGGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGGTTAGCTTTTGACTTGCTCGTAGACTACATGCACAAGGCCTTGTTAGAGATTTGGCCACTACTAGCAAAAGACAAGGAGATGACTACACAATTTTTCGAACC
ATTCATTGGTGTCGAGGAAAGTTTGAGGCGTGAATTTCGAGACCAGTTGGATGCAGAGCATCCTACACAAAATATAGCCGAGTTGACATTTAACAGGAGTGTCGCCTCGA
TGATCGATATTAAACACATTAGAGAAGCCTTGGATCTGATGACAGAAAGGCATGAAATAGAATGCGATGATGAAGAAGATGAGCATGTTGACGATTATAGGATTTCAAGT
TGCGAAAAAACCACGCCCCAGAAGCATCATTCTCTGAATCTACAATGGAAAAGGCCAGGGGGACGATTTGAGAGTTCTCATCTAAGGTCATGGGTGAGAGTGGCCAATAC
GCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGT
GTTTCCTTAAGTGGTTGTTCATTAGAGGAGCGCTGGTACTTAAGGAGACAGATGTAACACAGGGCATCGTAGACGCCAGTGGGCAGCGTCGAGATGCTACGGATATTTCA
ATCCAAGATGTTTTCGCGCTGGCATCTCGACGGCTCAATTATTCGGTTCTTGGCGTCATAATTCAGGCCCGCTTCAGTACAATTGGGTCTTTTCACCTCCTTGTCGTTCA
AGACATCGAGATGGCTCCAAAACTCTTAATGGCCCAAATTAGCACCAAATTAATACCCCGTGAATCTCAGAATTCTATCGAAAAGAACAGTTGCGGTCGCAAATCGGGTA
CAAAATCTCTGTGCACTGTCTTGACACTTCTGTCTTCAGCTTGGGTTGTTTTCCTTATAAGCGATGATTCAGACGGGGAGGGTGGCGACGACGATGCTCAACAGAAGGAG
GAGAGATACAGATCCACGACCACAAACCACGGGGAGAGGAGGGACTCGCGCAAAGGAGAGAAACGCAACGGCGACTCGGGCTGGGTGAAGCCGACGATGCTGCTATTGTT
GGCACGAGGGTGGCGACGCTTGGGCTGA
Protein sequenceShow/hide protein sequence
MGRLAFDLLVDYMHKALLEIWPLLAKDKEMTTQFFEPFIGVEESLRREFRDQLDAEHPTQNIAELTFNRSVASMIDIKHIREALDLMTERHEIECDDEEDEHVDDYRISS
CEKTTPQKHHSLNLQWKRPGGRFESSHLRSWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECFLKWLFIRGALVLKETDVTQGIVDASGQRRDATDIS
IQDVFALASRRLNYSVLGVIIQARFSTIGSFHLLVVQDIEMAPKLLMAQISTKLIPRESQNSIEKNSCGRKSGTKSLCTVLTLLSSAWVVFLISDDSDGEGGDDDAQQKE
ERYRSTTTNHGERRDSRKGEKRNGDSGWVKPTMLLLLARGWRRLG