; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010576 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010576
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr1:1630483..1631687
RNA-Seq ExpressionLag0010576
SyntenyLag0010576
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.1e-1657Show/hide
Query:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLR
        +SMA  EEENQC MST  R SAF+RLS+S SKK R S S FDRLK+TNDQ +R++ + + K F E N   K+ S VPSRMKRK+ V IN    EGS T++
Subjt:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLR

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-1657Show/hide
Query:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLR
        +SMA  EEENQC MST TR SAF+RLS+S SKK R S S FDRLK+TNDQ +R++ +L+ K F E N   K+ S VPSR+KRK+ + IN    EGS T++
Subjt:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLR

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]6.1e-1660.44Show/hide
Query:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIE
        +SMA  EEENQC  ST TR SAF+RLS+S SKK R S S FDR K+TN+Q +R+I +L+ KLF E N   K+ S VPSRMKRK+ V IN E
Subjt:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIE

TYK15150.1 hypothetical protein E5676_scaffold790G00140 [Cucumis melo var. makuwa]2.5e-1753.39Show/hide
Query:  MAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLRCS
        M  T+EENQC  ST TR SAF+RLS+S SKK RS  S FDRLK+TNDQ +R++  L+ K F E N   K+ S VPSRMK K+ V IN E L G    RCS
Subjt:  MAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLRCS

Query:  S--FSPSSKVLTRFAAVP
        S   SP  +    FA+ P
Subjt:  S--FSPSSKVLTRFAAVP

TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]6.1e-1660.44Show/hide
Query:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIE
        +SMA  EEENQC  ST TR SAF+RLS+S SKK R S S FDR K+TN+Q +R+I +L+ KLF E N   K+ S VPSRMKRK+ V IN E
Subjt:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIE

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein3.0e-1657Show/hide
Query:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLR
        +SMA  EEENQC MST  R SAF+RLS+S SKK R S S FDRLK+TNDQ +R++ + + K F E N   K+ S VPSRMKRK+ V IN    EGS T++
Subjt:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLR

A0A5A7U974 Retrotransposon gag protein2.3e-1657Show/hide
Query:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLR
        +SMA  EEENQC MST TR SAF+RLS+S SKK R S S FDRLK+TNDQ +R++ +L+ K F E N   K+ S VPSR+KRK+ + IN    EGS T++
Subjt:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLR

A0A5A7VHY3 Uncharacterized protein3.0e-1660.44Show/hide
Query:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIE
        +SMA  EEENQC  ST TR SAF+RLS+S SKK R S S FDR K+TN+Q +R+I +L+ KLF E N   K+ S VPSRMKRK+ V IN E
Subjt:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIE

A0A5D3CUQ9 Uncharacterized protein1.2e-1753.39Show/hide
Query:  MAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLRCS
        M  T+EENQC  ST TR SAF+RLS+S SKK RS  S FDRLK+TNDQ +R++  L+ K F E N   K+ S VPSRMK K+ V IN E L G    RCS
Subjt:  MAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLRCS

Query:  S--FSPSSKVLTRFAAVP
        S   SP  +    FA+ P
Subjt:  S--FSPSSKVLTRFAAVP

A0A5D3E2D7 Gag protease polyprotein3.0e-1660.44Show/hide
Query:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIE
        +SMA  EEENQC  ST TR SAF+RLS+S SKK R S S FDR K+TN+Q +R+I +L+ KLF E N   K+ S VPSRMKRK+ V IN E
Subjt:  MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTTGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCATATCGAAGAAAAGTCGATCTTC
AATATCTGTCTTTGATCGCCTAAAAGTAACAAACGATCAACCTAAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAACAGAGGCAAAAAGCTTCAAA
GTATTGTCCCGTCACGGATGAAAAGGAAGATTTGTGTTCTCATAAATATAGAAGTTCTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTTTCTCCAAGTTCAAAGGTT
CTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGTGCTTCGCTGCAGTTC
CTTCTCTCCAAGTTCGAAGGTTCTCATGTGCTTCGCGGCAGTTCCTTCACAGCAGGCCCAATTGTTTATTGTTTATTCCACGCATACAATTTTAGAGGCTTCTTCAAAGA
TCCCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGCAGTCGCACCAAGGAAACCCAACACGAAGACAGCCAAACTTCTGTCATTGCAAACAAGATGCTGAGACGC
ATGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTTGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCATATCGAAGAAAAGTCGATCTTC
AATATCTGTCTTTGATCGCCTAAAAGTAACAAACGATCAACCTAAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAACAGAGGCAAAAAGCTTCAAA
GTATTGTCCCGTCACGGATGAAAAGGAAGATTTGTGTTCTCATAAATATAGAAGTTCTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTTTCTCCAAGTTCAAAGGTT
CTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGTGCTTCGCTGCAGTTC
CTTCTCTCCAAGTTCGAAGGTTCTCATGTGCTTCGCGGCAGTTCCTTCACAGCAGGCCCAATTGTTTATTGTTTATTCCACGCATACAATTTTAGAGGCTTCTTCAAAGA
TCCCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGCAGTCGCACCAAGGAAACCCAACACGAAGACAGCCAAACTTCTGTCATTGCAAACAAGATGCTGAGACGC
ATGACATAA
Protein sequenceShow/hide protein sequence
MSMAATEEENQCLMSTSTRPSAFQRLSVSISKKSRSSISVFDRLKVTNDQPKRKIDNLEVKLFDEVNRGKKLQSIVPSRMKRKICVLINIEVLEGSHTLRCSSFSPSSKV
LTRFAAVPSLQVRRFSCASLQFLLSKFEGSHVLRCSSFSPSSKVLMCFAAVPSQQAQLFIVYSTHTILEASSKIPASSNSYVGPITRSRTKETQHEDSQTSVIANKMLRR
MT